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Database: UniProt
Entry: A0A1I3ACX9_9RHOB
LinkDB: A0A1I3ACX9_9RHOB
Original site: A0A1I3ACX9_9RHOB 
ID   A0A1I3ACX9_9RHOB        Unreviewed;       849 AA.
AC   A0A1I3ACX9;
DT   12-APR-2017, integrated into UniProtKB/TrEMBL.
DT   12-APR-2017, sequence version 1.
DT   24-JAN-2024, entry version 23.
DE   RecName: Full=DNA ligase (ATP) {ECO:0000256|ARBA:ARBA00012727};
DE            EC=6.5.1.1 {ECO:0000256|ARBA:ARBA00012727};
DE   AltName: Full=NHEJ DNA polymerase {ECO:0000256|ARBA:ARBA00029943};
GN   ORFNames=SAMN04488021_1148 {ECO:0000313|EMBL:SFH47569.1};
OS   Paracoccus aminovorans.
OC   Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales;
OC   Paracoccaceae; Paracoccus.
OX   NCBI_TaxID=34004 {ECO:0000313|EMBL:SFH47569.1, ECO:0000313|Proteomes:UP000183635};
RN   [1] {ECO:0000313|EMBL:SFH47569.1, ECO:0000313|Proteomes:UP000183635}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=DSM 8537 {ECO:0000313|EMBL:SFH47569.1,
RC   ECO:0000313|Proteomes:UP000183635};
RA   de Groot N.N.;
RL   Submitted (OCT-2016) to the EMBL/GenBank/DDBJ databases.
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=ATP + (deoxyribonucleotide)n-3'-hydroxyl + 5'-phospho-
CC         (deoxyribonucleotide)m = (deoxyribonucleotide)n+m + AMP +
CC         diphosphate.; EC=6.5.1.1; Evidence={ECO:0000256|ARBA:ARBA00034003};
CC   -!- COFACTOR:
CC       Name=Mn(2+); Xref=ChEBI:CHEBI:29035;
CC         Evidence={ECO:0000256|ARBA:ARBA00001936};
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DR   EMBL; FOPU01000014; SFH47569.1; -; Genomic_DNA.
DR   RefSeq; WP_074967553.1; NZ_LN832562.1.
DR   AlphaFoldDB; A0A1I3ACX9; -.
DR   STRING; 34004.SAMN04488021_1148; -.
DR   OrthoDB; 9802472at2; -.
DR   Proteomes; UP000183635; Unassembled WGS sequence.
DR   GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0003910; F:DNA ligase (ATP) activity; IEA:UniProtKB-EC.
DR   GO; GO:0003887; F:DNA-directed DNA polymerase activity; IEA:UniProtKB-KW.
DR   GO; GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.
DR   GO; GO:0006310; P:DNA recombination; IEA:InterPro.
DR   GO; GO:0006281; P:DNA repair; IEA:InterPro.
DR   CDD; cd07906; Adenylation_DNA_ligase_LigD_LigC; 1.
DR   CDD; cd07971; OBF_DNA_ligase_LigD; 1.
DR   CDD; cd04862; PaeLigD_Pol_like; 1.
DR   Gene3D; 3.30.1490.70; -; 1.
DR   Gene3D; 3.30.470.30; DNA ligase/mRNA capping enzyme; 1.
DR   Gene3D; 3.90.920.10; DNA primase, PRIM domain; 1.
DR   Gene3D; 2.40.50.140; Nucleic acid-binding proteins; 1.
DR   InterPro; IPR012309; DNA_ligase_ATP-dep_C.
DR   InterPro; IPR012310; DNA_ligase_ATP-dep_cent.
DR   InterPro; IPR014146; LigD_ligase_dom.
DR   InterPro; IPR014144; LigD_PE_domain.
DR   InterPro; IPR014145; LigD_pol_dom.
DR   InterPro; IPR012340; NA-bd_OB-fold.
DR   InterPro; IPR014143; NHEJ_ligase_prk.
DR   InterPro; IPR033651; PaeLigD_Pol-like.
DR   NCBIfam; TIGR02777; LigD_PE_dom; 1.
DR   NCBIfam; TIGR02778; ligD_pol; 1.
DR   NCBIfam; TIGR02779; NHEJ_ligase_lig; 1.
DR   NCBIfam; TIGR02776; NHEJ_ligase_prk; 1.
DR   PANTHER; PTHR42705; BIFUNCTIONAL NON-HOMOLOGOUS END JOINING PROTEIN LIGD; 1.
DR   PANTHER; PTHR42705:SF2; BIFUNCTIONAL NON-HOMOLOGOUS END JOINING PROTEIN LIGD; 1.
DR   Pfam; PF04679; DNA_ligase_A_C; 1.
DR   Pfam; PF01068; DNA_ligase_A_M; 1.
DR   Pfam; PF13298; LigD_N; 1.
DR   Pfam; PF21686; LigD_Prim-Pol; 1.
DR   SUPFAM; SSF56091; DNA ligase/mRNA capping enzyme, catalytic domain; 1.
DR   SUPFAM; SSF50249; Nucleic acid-binding proteins; 1.
DR   PROSITE; PS50160; DNA_LIGASE_A3; 1.
PE   4: Predicted;
KW   ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW   DNA damage {ECO:0000256|ARBA:ARBA00022763};
KW   DNA recombination {ECO:0000256|ARBA:ARBA00023172};
KW   DNA repair {ECO:0000256|ARBA:ARBA00023204};
KW   DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW   DNA-directed DNA polymerase {ECO:0000256|ARBA:ARBA00022932};
KW   Exonuclease {ECO:0000256|ARBA:ARBA00022839};
KW   Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW   Ligase {ECO:0000256|ARBA:ARBA00022598};
KW   Manganese {ECO:0000256|ARBA:ARBA00023211};
KW   Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW   Multifunctional enzyme {ECO:0000256|ARBA:ARBA00023268};
KW   Nuclease {ECO:0000256|ARBA:ARBA00022722};
KW   Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW   Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW   Reference proteome {ECO:0000313|Proteomes:UP000183635};
KW   Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT   DOMAIN          332..456
FT                   /note="ATP-dependent DNA ligase family profile"
FT                   /evidence="ECO:0000259|PROSITE:PS50160"
FT   REGION          1..26
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          187..232
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1..24
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        211..225
FT                   /note="Pro residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   849 AA;  93647 MW;  34E5865752AC333C CRC64;
     MALETYREKR DFSATPEPRG GRRRRTGHAF VIQKHAATRL HYDFRLELDG VLKSWAVAKG
     PSLVPGEKRL AVHVEDHPLE YGDFEGTIPK GEYGGGTVIL WDRGTWTPEG DPHQAYAKGH
     LEFTLHGEKL GGRWHLVRMR GKPREKRENW LLIKGEDDFA RGEDAPDILE ERPESVKTGR
     VIADVAGEAP GWSSKTGRIR KTSARAAKTP EPTPDPRPSP DPPEPAQVKG ARKAAMPGFV
     PPMLATLVSA APQGDRWLHE IKFDGYRLQA RIEAGRVKLL TRSGLDWTAR FGKAVPQALR
     DLPVGSAILD GELVVETDAG ASDFSALQAD LSAGRDDRFA FYAFDLLYLD GYDLRGAALV
     ERKALLAQLL GAEGGPLRYS GHFDESGALV LRHACRLSLE GIVSKLRDGP YRTGRGKSWV
     KSKCSARQEF VVAGYVPSSV SRRAIGSLIL GVYGDGGLEH VGRVGTGFSA AVAEDLFRRL
     ERLRIPESPF AAPLTAEEAR QARFVRPELV AEVEFRAWTA DGHLRHAAFR GIREDKQPEE
     IVRETAKPAA KVPAPQRRRV RLTHPDRIYW PAEGVTKEGL ADYYAEVWRH ISPWITGRPL
     ALLRCPNGIE GEKFFQKHAW KGISPHVVQV QDPKDPQGEP LIAIEDLDGL MGLVQSATLE
     IHPWGSTLAD WERPDLITMD LDPGEAVEWS AVIAAARELR RRFEDHGLSA FVKTSGGKGL
     HVVAPLRPQA EWPAVKAFTK AMADAMAADD PDRYVSTISK AKRRGKILID YLRNQRGATA
     VAAYSTRARP GAAVSAPLRW EELDEGIGPA WFTIQNMPTR LATLAADPWE GFRAAAVPLK
     APKTGRKKA
//
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