ID A0A1I6CY21_9FIRM Unreviewed; 594 AA.
AC A0A1I6CY21;
DT 22-NOV-2017, integrated into UniProtKB/TrEMBL.
DT 22-NOV-2017, sequence version 1.
DT 24-JAN-2024, entry version 27.
DE SubName: Full=PAS domain S-box-containing protein {ECO:0000313|EMBL:SFQ98012.1};
GN ORFNames=SAMN05660706_10330 {ECO:0000313|EMBL:SFQ98012.1};
OS Desulfoscipio geothermicus DSM 3669.
OC Bacteria; Bacillota; Clostridia; Eubacteriales; Desulfallaceae;
OC Desulfoscipio.
OX NCBI_TaxID=1121426 {ECO:0000313|EMBL:SFQ98012.1, ECO:0000313|Proteomes:UP000199584};
RN [1] {ECO:0000313|Proteomes:UP000199584}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=DSM 3669 {ECO:0000313|Proteomes:UP000199584};
RA Varghese N., Submissions S.;
RL Submitted (OCT-2016) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; FOYM01000003; SFQ98012.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A1I6CY21; -.
DR STRING; 39060.SAMN05660706_10330; -.
DR OrthoDB; 9803970at2; -.
DR Proteomes; UP000199584; Unassembled WGS sequence.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016887; F:ATP hydrolysis activity; IEA:InterPro.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd00009; AAA; 1.
DR CDD; cd00130; PAS; 1.
DR Gene3D; 1.10.8.60; -; 1.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR Gene3D; 3.30.450.20; PAS domain; 1.
DR InterPro; IPR003593; AAA+_ATPase.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR030828; HTH_TypR.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR000014; PAS.
DR InterPro; IPR035965; PAS-like_dom_sf.
DR InterPro; IPR002078; Sigma_54_int.
DR InterPro; IPR025662; Sigma_54_int_dom_ATP-bd_1.
DR InterPro; IPR025943; Sigma_54_int_dom_ATP-bd_2.
DR InterPro; IPR025944; Sigma_54_int_dom_CS.
DR NCBIfam; TIGR00229; sensory_box; 1.
DR PANTHER; PTHR32071:SF57; SIGMA L-DEPENDENT TRANSCRIPTIONAL REGULATOR YQIR-RELATED; 1.
DR PANTHER; PTHR32071; TRANSCRIPTIONAL REGULATORY PROTEIN; 1.
DR Pfam; PF18024; HTH_50; 1.
DR Pfam; PF13426; PAS_9; 1.
DR Pfam; PF00158; Sigma54_activat; 1.
DR SMART; SM00382; AAA; 1.
DR SMART; SM00091; PAS; 1.
DR SUPFAM; SSF55781; GAF domain-like; 1.
DR SUPFAM; SSF46689; Homeodomain-like; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR SUPFAM; SSF55785; PYP-like sensor domain (PAS domain); 1.
DR PROSITE; PS50112; PAS; 1.
DR PROSITE; PS00675; SIGMA54_INTERACT_1; 1.
DR PROSITE; PS00676; SIGMA54_INTERACT_2; 1.
DR PROSITE; PS00688; SIGMA54_INTERACT_3; 1.
DR PROSITE; PS50045; SIGMA54_INTERACT_4; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000199584};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 154..199
FT /note="PAS"
FT /evidence="ECO:0000259|PROSITE:PS50112"
FT DOMAIN 281..511
FT /note="Sigma-54 factor interaction"
FT /evidence="ECO:0000259|PROSITE:PS50045"
SQ SEQUENCE 594 AA; 66808 MW; 2E0604DDDFF646B5 CRC64;
MSLLMSISHT AQQVAEAISA VLDVETEIID AEYTIVAGTG KYRGLVGTKD DEAWDTDGDF
IYTRVLKTGR TFVIDDPENN IYGPILMGEM GEICCPIKLR DSVIGVLALV AFDEMQKNKL
LKKKEQLLNF LHRMAFLLAS RVSEVEAYNR LEVTSNKLKI IVESIHQGIL AINQQGIITH
CNSYAESIIG IQRDFILGRH INQIWPNSPV SEALKTGTGY KEKEELYGTL PHQLHLLVTA
TPIKVENQTR GVVVSFRNMS DARQLAYDLT DNKIALELDQ IIGNSRKIME VKYQALRVAR
GNSTILITGE SGTGKELFSR AIHYASPRRD KPLVIVNCGA IPETLLESEL FGYAEGAFTG
ARKGGRAGKF ELANGGTVFL DEIGDLPLHL QVKLLHVLQR REVERVGSNK PIPVDVRIIA
ATNKNLESMC TTGEFREDLF YRLNVIPFYI PPLRERKEDI ITLMEHFLVK YCNLLGKNIT
DFSDNVHQAF TVYDWPGNVR ELENAIEYAV NMEPGKIITL ESIPKKIRNQ WLAGDQLPEE
NNLKDHLDNL EKDLLINKIL ELSKYNLSKK ELAGALGISR ATLYRKIKQY GIKL
//
