ID A0A1J5L8A6_9BACT Unreviewed; 708 AA.
AC A0A1J5L8A6;
DT 15-FEB-2017, integrated into UniProtKB/TrEMBL.
DT 15-FEB-2017, sequence version 1.
DT 24-JAN-2024, entry version 17.
DE SubName: Full=RNA-binding transcriptional accessory protein {ECO:0000313|EMBL:OIQ29917.1};
GN ORFNames=BM564_03855 {ECO:0000313|EMBL:OIQ29917.1};
OS Bacteroidetes bacterium MedPE-SWsnd-G2.
OC Bacteria; Bacteroidota.
OX NCBI_TaxID=1860095 {ECO:0000313|EMBL:OIQ29917.1, ECO:0000313|Proteomes:UP000183188};
RN [1] {ECO:0000313|EMBL:OIQ29917.1, ECO:0000313|Proteomes:UP000183188}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=MedPE-SWsnd-G2 {ECO:0000313|EMBL:OIQ29917.1};
RX PubMed=27446036; DOI=10.3389/fmicb.2016.00996;
RA Lopez-Perez M., Kimes N.E., Haro-Moreno J.M., Rodriguez-Valera F.;
RT "Not All Particles Are Equal: The Selective Enrichment of Particle-
RT Associated Bacteria from the Mediterranean Sea.";
RL Front. Microbiol. 7:996-996(2016).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:OIQ29917.1}.
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DR EMBL; MPDE01000003; OIQ29917.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A1J5L8A6; -.
DR STRING; 1860095.BM564_03855; -.
DR Proteomes; UP000183188; Unassembled WGS sequence.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0006139; P:nucleobase-containing compound metabolic process; IEA:InterPro.
DR CDD; cd05685; S1_Tex; 1.
DR Gene3D; 2.40.50.140; Nucleic acid-binding proteins; 1.
DR Gene3D; 1.10.10.650; RuvA domain 2-like; 1.
DR Gene3D; 1.10.3500.10; Tex N-terminal region-like; 1.
DR Gene3D; 1.10.150.310; Tex RuvX-like domain-like; 1.
DR Gene3D; 3.30.420.140; YqgF/RNase H-like domain; 1.
DR InterPro; IPR041692; HHH_9.
DR InterPro; IPR012340; NA-bd_OB-fold.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR010994; RuvA_2-like.
DR InterPro; IPR003029; S1_domain.
DR InterPro; IPR044146; S1_Tex.
DR InterPro; IPR023323; Tex-like_dom_sf.
DR InterPro; IPR023319; Tex-like_HTH_dom_sf.
DR InterPro; IPR018974; Tex-like_N.
DR InterPro; IPR032639; Tex_YqgF.
DR InterPro; IPR006641; YqgF/RNaseH-like_dom.
DR InterPro; IPR037027; YqgF/RNaseH-like_dom_sf.
DR PANTHER; PTHR10724; 30S RIBOSOMAL PROTEIN S1; 1.
DR PANTHER; PTHR10724:SF10; S1 RNA-BINDING DOMAIN-CONTAINING PROTEIN 1; 1.
DR Pfam; PF12836; HHH_3; 1.
DR Pfam; PF17674; HHH_9; 1.
DR Pfam; PF00575; S1; 1.
DR Pfam; PF09371; Tex_N; 1.
DR Pfam; PF16921; Tex_YqgF; 1.
DR SMART; SM00316; S1; 1.
DR SMART; SM00732; YqgFc; 1.
DR SUPFAM; SSF50249; Nucleic acid-binding proteins; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR SUPFAM; SSF47781; RuvA domain 2-like; 2.
DR SUPFAM; SSF158832; Tex N-terminal region-like; 1.
DR PROSITE; PS50126; S1; 1.
PE 4: Predicted;
FT DOMAIN 638..707
FT /note="S1 motif"
FT /evidence="ECO:0000259|PROSITE:PS50126"
SQ SEQUENCE 708 AA; 78739 MW; 12934484F19FA8BB CRC64;
MSQITSFIAK HTTISNKAIN ATLKLLSEDC SIPFIARYRK ELTGNLDEVA LGEIVNFKTL
FENLEKRKSS ISSTLQEQGD LTPELKDKIN NCESLVTLED LYLPYKKKRK TKAEIARKQG
LEPLAKIIMS QNADNLEQTA KRFLNTEIKT AETALVGARH IIAEWISERQ DIRAMLRQNM
ERYALITTKV KSAQKTEEKA QKYRDYFDWS ESLSRCPSHR LLAILRAETE GYIRLKIEVD
QDRIVNKIES KIIRSHSDCA TQIQLAIEDS FKRLLLPSIS NEALQKAKAK ADDQAILVFS
KNLKQLLLAA PLGEKRILAI DPGFRTGCKV VCLDAQGNLK HNETIFPHAP KNDSIGAIKK
ISQLAEAYKI EAIAIGNGTA SRETEQLIKK VHFKHDVEVY IVSEAGASIY SASKIARAEF
PNYDVTVRGA VSIGRRLSDP LAELVKLDPK SIGVGQYQHD VDQAKLKGSL DRVVENSVNT
VGVNINTASQ YLLSYVSGIG PKLAENIIAY RTENGSFGSR AEIKKVPRLG EKAFQQSAGF
LRIKDAKNPL DDSAVHPERY ALVNQIAKDR NTDVAALIGN TAELSAINLE FYCNESIGLP
TLKDILTELE KPGLDVRAKA KVFTFNKNIK TISDVQVGQV LPGIVNNITN FGCFVDIGIK
ESGLIHISNL ADGFVSDVNA HVSLQEHVIV KVLEVDINRK RIQLSLKR
//
