ID A0A1L6J9U8_9SPHN Unreviewed; 1157 AA.
AC A0A1L6J9U8;
DT 15-MAR-2017, integrated into UniProtKB/TrEMBL.
DT 15-MAR-2017, sequence version 1.
DT 27-MAR-2024, entry version 33.
DE RecName: Full=Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969};
DE Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};
DE EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};
GN Name=mfd {ECO:0000256|HAMAP-Rule:MF_00969,
GN ECO:0000313|EMBL:RSU19212.1};
GN ORFNames=BRX38_03505 {ECO:0000313|EMBL:RSU44206.1}, BRX39_02740
GN {ECO:0000313|EMBL:RSU38047.1}, BRX40_09995
GN {ECO:0000313|EMBL:APR52711.1}, CA221_05595
GN {ECO:0000313|EMBL:RSU51872.1}, CA222_05230
GN {ECO:0000313|EMBL:RSU28464.1}, CA223_09145
GN {ECO:0000313|EMBL:RSU40111.1}, CA224_12715
GN {ECO:0000313|EMBL:RSU19212.1}, CA225_03750
GN {ECO:0000313|EMBL:RSU31214.1}, CA226_05280
GN {ECO:0000313|EMBL:RSV65340.1}, CA227_01245
GN {ECO:0000313|EMBL:RSX15829.1}, CA228_00940
GN {ECO:0000313|EMBL:RSV61806.1}, CA229_18925
GN {ECO:0000313|EMBL:RSV52161.1}, CA230_09975
GN {ECO:0000313|EMBL:RSW98138.1}, CA231_13935
GN {ECO:0000313|EMBL:RSV45639.1}, CA232_10815
GN {ECO:0000313|EMBL:RSV36630.1}, CA238_08595
GN {ECO:0000313|EMBL:RSV25349.1}, CA239_09670
GN {ECO:0000313|EMBL:RSV29368.1}, CA240_05240
GN {ECO:0000313|EMBL:RSV09818.1}, CA242_08800
GN {ECO:0000313|EMBL:RSV10224.1}, CA253_10440
GN {ECO:0000313|EMBL:RSU88530.1}, CA256_04785
GN {ECO:0000313|EMBL:RSU98017.1}, CA257_14090
GN {ECO:0000313|EMBL:RSV01829.1}, DAH52_08305
GN {ECO:0000313|EMBL:RSU95421.1}, DAH53_17110
GN {ECO:0000313|EMBL:RSU77202.1}, DAH54_09865
GN {ECO:0000313|EMBL:RSU82080.1}, DAH57_07945
GN {ECO:0000313|EMBL:RSZ20847.1}, DAH58_12760
GN {ECO:0000313|EMBL:RSZ13796.1}, DAH59_12060
GN {ECO:0000313|EMBL:RSY97251.1}, DAH60_14220
GN {ECO:0000313|EMBL:RSZ09402.1}, DAH61_07820
GN {ECO:0000313|EMBL:RSZ02054.1}, DAH62_10925
GN {ECO:0000313|EMBL:RSY95389.1}, DAH63_07430
GN {ECO:0000313|EMBL:RSZ11806.1}, DAH64_01735
GN {ECO:0000313|EMBL:RSY86363.1}, DAH65_03455
GN {ECO:0000313|EMBL:RSY89131.1}, DAH67_05470
GN {ECO:0000313|EMBL:RSY74241.1}, DAH68_04125
GN {ECO:0000313|EMBL:RSY73845.1}, DAH69_13875
GN {ECO:0000313|EMBL:RSY60828.1}, DAH70_13100
GN {ECO:0000313|EMBL:RSY55188.1}, DAH71_13380
GN {ECO:0000313|EMBL:RSY52578.1}, DAH72_08595
GN {ECO:0000313|EMBL:RSY68386.1}, DAH73_08610
GN {ECO:0000313|EMBL:RSY35495.1}, DAH74_10775
GN {ECO:0000313|EMBL:RSY45039.1}, DAH75_07930
GN {ECO:0000313|EMBL:RSY39970.1}, DAH76_04685
GN {ECO:0000313|EMBL:RSY49405.1}, DAH77_12295
GN {ECO:0000313|EMBL:RSY23896.1}, DAH78_04685
GN {ECO:0000313|EMBL:RSY14996.1}, DAH79_07720
GN {ECO:0000313|EMBL:RSY29663.1}, DAH80_06405
GN {ECO:0000313|EMBL:RSY22902.1}, DAH81_07695
GN {ECO:0000313|EMBL:RSY15255.1}, DAH82_05845
GN {ECO:0000313|EMBL:RSY02536.1}, DAH83_02960
GN {ECO:0000313|EMBL:RSY09820.1}, DAH84_09275
GN {ECO:0000313|EMBL:RSX83028.1}, DAH85_02950
GN {ECO:0000313|EMBL:RSX95780.1}, DAH86_03335
GN {ECO:0000313|EMBL:RSX91187.1}, DAH87_00490
GN {ECO:0000313|EMBL:RSX99371.1}, DAH88_06590
GN {ECO:0000313|EMBL:RSX67427.1}, DAH89_12985
GN {ECO:0000313|EMBL:RSX72195.1}, DAH90_05010
GN {ECO:0000313|EMBL:RSX80952.1}, DAH91_04820
GN {ECO:0000313|EMBL:RSX64226.1}, DAH92_16665
GN {ECO:0000313|EMBL:RSX64729.1}, DAH93_10850
GN {ECO:0000313|EMBL:RSX45900.1}, DAH94_05400
GN {ECO:0000313|EMBL:RSX43472.1}, DAH95_13720
GN {ECO:0000313|EMBL:RSX37043.1}, DAH96_02860
GN {ECO:0000313|EMBL:RSX23263.1}, DAH97_15370
GN {ECO:0000313|EMBL:RSX27862.1}, DAH98_05990
GN {ECO:0000313|EMBL:RSX28945.1}, DAH99_19380
GN {ECO:0000313|EMBL:RSX18767.1}, DAI00_14550
GN {ECO:0000313|EMBL:RSX06639.1}, DAI01_01740
GN {ECO:0000313|EMBL:RSX11016.1};
OS Sphingomonas koreensis.
OC Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
OC Sphingomonadaceae; Sphingomonas.
OX NCBI_TaxID=93064 {ECO:0000313|EMBL:APR52711.1, ECO:0000313|Proteomes:UP000185161};
RN [1] {ECO:0000313|EMBL:APR52711.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=ABOJV {ECO:0000313|EMBL:APR52711.1};
RA Conlan S., Thomas P.J., Mullikin J., Palmore T.N., Frank K.M., Segre J.A.;
RT "Whole genome sequencing of Sphingomonas koreensis.";
RL Submitted (DEC-2016) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|Proteomes:UP000185161}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ABOJV {ECO:0000313|Proteomes:UP000185161};
RA Conlan S., Thomas P.J., Mullikin J., Palmore T.N., Frank K.M., Segre J.A.;
RT "Whole genome sequencing of Sphingomonas sp. ABOJV.";
RL Submitted (DEC-2016) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|Proteomes:UP000286970, ECO:0000313|Proteomes:UP000287271}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=SK-NIH.Env2_1116 {ECO:0000313|EMBL:RSU28464.1,
RC ECO:0000313|Proteomes:UP000286970}, SK-NIH.Env3_1116
RC {ECO:0000313|EMBL:RSU40111.1, ECO:0000313|Proteomes:UP000287271},
RC SK-NIH.Env4_1116 {ECO:0000313|EMBL:RSU19212.1,
RC ECO:0000313|Proteomes:UP000287347}, SK-NIH.Env8_1116
RC {ECO:0000313|EMBL:RSU31214.1, ECO:0000313|Proteomes:UP000287976},
RC SK-NIH.Pt2_0716 {ECO:0000313|EMBL:RSU44206.1,
RC ECO:0000313|Proteomes:UP000287307}, SK-NIH.Pt4_0816
RC {ECO:0000313|EMBL:RSU38047.1, ECO:0000313|Proteomes:UP000287414}, and
RC SK-NIH.Pt6_1016 {ECO:0000313|EMBL:RSU51872.1,
RC ECO:0000313|Proteomes:UP000287315};
RA Johnson R.C., Deming C., Conlan S., Zellmer C., Michelin A., Lee-Lin S.-Q.,
RA Thomas P.J., Park M., Weingarten R.A., Less J., Dekker J.P., Frank K.M.,
RA Musser K.A., Mcquiston J.R., Henderson D.K., Lau A.F., Palmore T.N.,
RA Segre J.A.;
RT "Genomic and Epidemiologic Investigation to Identify Sphingomonas koreensis
RT Point Sources in an Indolent Hospital Outbreak.";
RL Submitted (JUN-2018) to the EMBL/GenBank/DDBJ databases.
RN [4] {ECO:0000313|Proteomes:UP000286706, ECO:0000313|Proteomes:UP000286739}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=SK-NIH.Env13_0417 {ECO:0000313|EMBL:RSZ13796.1,
RC ECO:0000313|Proteomes:UP000287513}, SK-NIH.Env14_0417
RC {ECO:0000313|EMBL:RSY97251.1, ECO:0000313|Proteomes:UP000288569},
RC SK-NIH.Env16_0517 {ECO:0000313|EMBL:RSZ09402.1,
RC ECO:0000313|Proteomes:UP000287015}, SK-NIH.Env17_0517
RC {ECO:0000313|EMBL:RSZ20847.1, ECO:0000313|Proteomes:UP000287799},
RC SK-NIH.Env18_0517 {ECO:0000313|EMBL:RSZ02054.1,
RC ECO:0000313|Proteomes:UP000288230}, SK-NIH.Env19_0617
RC {ECO:0000313|EMBL:RSY86363.1, ECO:0000313|Proteomes:UP000288258},
RC SK-NIH.Env20_0617 {ECO:0000313|EMBL:RSY89131.1,
RC ECO:0000313|Proteomes:UP000287482}, SK-NIH.Env21_0617
RC {ECO:0000313|EMBL:RSY95389.1, ECO:0000313|Proteomes:UP000287363},
RC SK-NIH.Env22_0617 {ECO:0000313|EMBL:RSZ11806.1,
RC ECO:0000313|Proteomes:UP000287001}, SK-NIH.Env23_0717
RC {ECO:0000313|EMBL:RSY74241.1, ECO:0000313|Proteomes:UP000287360},
RC SK-NIH.Env24_0717 {ECO:0000313|EMBL:RSY73845.1,
RC ECO:0000313|Proteomes:UP000287229}, SK-NIH.Env25_0717
RC {ECO:0000313|EMBL:RSY60828.1, ECO:0000313|Proteomes:UP000288269},
RC SK-NIH.Env26_0717 {ECO:0000313|EMBL:RSY55188.1,
RC ECO:0000313|Proteomes:UP000287417}, SK-NIH.Env27_0717
RC {ECO:0000313|EMBL:RSY52578.1, ECO:0000313|Proteomes:UP000286788},
RC SK-NIH.Env28_0717 {ECO:0000313|EMBL:RSY68386.1,
RC ECO:0000313|Proteomes:UP000288630}, SK-NIH.Env29_0717
RC {ECO:0000313|EMBL:RSY35495.1, ECO:0000313|Proteomes:UP000287038},
RC SK-NIH.Env30_0717 {ECO:0000313|EMBL:RSY45039.1,
RC ECO:0000313|Proteomes:UP000288207}, SK-NIH.Env31_0717
RC {ECO:0000313|EMBL:RSY39970.1, ECO:0000313|Proteomes:UP000287340},
RC SK-NIH.Env32_0717 {ECO:0000313|EMBL:RSY49405.1,
RC ECO:0000313|Proteomes:UP000288007}, SK-NIH.Env33_0717
RC {ECO:0000313|EMBL:RSY23896.1, ECO:0000313|Proteomes:UP000287541},
RC SK-NIH.Env34_0717 {ECO:0000313|EMBL:RSY14996.1,
RC ECO:0000313|Proteomes:UP000288649}, SK-NIH.Env35_0717
RC {ECO:0000313|EMBL:RSY29663.1, ECO:0000313|Proteomes:UP000287968},
RC SK-NIH.Env36_0717 {ECO:0000313|EMBL:RSY02536.1,
RC ECO:0000313|Proteomes:UP000288516}, SK-NIH.Env37_0717
RC {ECO:0000313|EMBL:RSY22902.1, ECO:0000313|Proteomes:UP000287028},
RC SK-NIH.Env38_0817 {ECO:0000313|EMBL:RSY15255.1,
RC ECO:0000313|Proteomes:UP000287257}, SK-NIH.Env39_0817
RC {ECO:0000313|EMBL:RSY09820.1, ECO:0000313|Proteomes:UP000287073},
RC SK-NIH.Env40_0817 {ECO:0000313|EMBL:RSX83028.1,
RC ECO:0000313|Proteomes:UP000288050}, SK-NIH.Env41_0817
RC {ECO:0000313|EMBL:RSX95780.1, ECO:0000313|Proteomes:UP000286739},
RC SK-NIH.Env42_0817 {ECO:0000313|EMBL:RSX91187.1,
RC ECO:0000313|Proteomes:UP000288181}, SK-NIH.Env43_0817
RC {ECO:0000313|EMBL:RSX99371.1, ECO:0000313|Proteomes:UP000286795},
RC SK-NIH.Env44_0817 {ECO:0000313|EMBL:RSX67427.1,
RC ECO:0000313|Proteomes:UP000286792}, SK-NIH.Env45_1017
RC {ECO:0000313|EMBL:RSX72195.1, ECO:0000313|Proteomes:UP000286760},
RC SK-NIH.Env46_1017 {ECO:0000313|EMBL:RSX64729.1,
RC ECO:0000313|Proteomes:UP000287577}, SK-NIH.Env47_1017
RC {ECO:0000313|EMBL:RSX45900.1, ECO:0000313|Proteomes:UP000288581},
RC SK-NIH.Env48_1017 {ECO:0000313|EMBL:RSX80952.1,
RC ECO:0000313|Proteomes:UP000287090}, SK-NIH.Env49_1017
RC {ECO:0000313|EMBL:RSX64226.1, ECO:0000313|Proteomes:UP000286744},
RC SK-NIH.Env50_1017 {ECO:0000313|EMBL:RSX43472.1,
RC ECO:0000313|Proteomes:UP000288198}, SK-NIH.Env51_1017
RC {ECO:0000313|EMBL:RSX37043.1, ECO:0000313|Proteomes:UP000287844},
RC SK-NIH.Env52_1017 {ECO:0000313|EMBL:RSX23263.1,
RC ECO:0000313|Proteomes:UP000287083}, SK-NIH.Env53_1017
RC {ECO:0000313|EMBL:RSX27862.1, ECO:0000313|Proteomes:UP000288435},
RC SK-NIH.Env54_1217 {ECO:0000313|EMBL:RSX18767.1,
RC ECO:0000313|Proteomes:UP000288203}, SK-NIH.Env55_1217
RC {ECO:0000313|EMBL:RSX06639.1, ECO:0000313|Proteomes:UP000286706},
RC SK-NIH.Env56_1217 {ECO:0000313|EMBL:RSX11016.1,
RC ECO:0000313|Proteomes:UP000287020}, and SK-NIH.Env57_1217
RC {ECO:0000313|EMBL:RSX28945.1, ECO:0000313|Proteomes:UP000287236};
RA Johnson R.C., Deming C., Conlan S., Zellmer C.J., Michelin A.V.,
RA Lee-Lin S.-Q., Thomas P.J., Park M., Weingarten R.A., Less J., Dekker J.P.,
RA Frank K.M., Musser K.A., Mcquiston J.R., Henderson D.K., Lau A.F.,
RA Palmore T.N., Segre J.A.;
RT "Genomic and Epidemiologic Investigation of an Indolent Hospital
RT Outbreak.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
RN [5] {ECO:0000313|Proteomes:UP000286681, ECO:0000313|Proteomes:UP000286696}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=SK-NIH.Env10_0317 {ECO:0000313|EMBL:RSV01829.1,
RC ECO:0000313|Proteomes:UP000286681}, SK-NIH.Env11_0417
RC {ECO:0000313|EMBL:RSU82080.1, ECO:0000313|Proteomes:UP000287165},
RC SK-NIH.Env12_0417 {ECO:0000313|EMBL:RSU95421.1,
RC ECO:0000313|Proteomes:UP000288342}, SK-NIH.Env15_0417
RC {ECO:0000313|EMBL:RSU77202.1, ECO:0000313|Proteomes:UP000288648},
RC SK-NIH.Env1_1016 {ECO:0000313|EMBL:RSV65340.1,
RC ECO:0000313|Proteomes:UP000288283}, SK-NIH.Env5_1116
RC {ECO:0000313|EMBL:RSV61806.1, ECO:0000313|Proteomes:UP000287812},
RC SK-NIH.Env7_1116 {ECO:0000313|EMBL:RSX15829.1,
RC ECO:0000313|Proteomes:UP000288130}, SK-NIH.Env9_0217
RC {ECO:0000313|EMBL:RSU88530.1, ECO:0000313|Proteomes:UP000287377},
RC SK-NIH.Pt10_0210 {ECO:0000313|EMBL:RSV10224.1,
RC ECO:0000313|Proteomes:UP000288286}, SK-NIH.Pt11_0411
RC {ECO:0000313|EMBL:RSW98138.1, ECO:0000313|Proteomes:UP000288535},
RC SK-NIH.Pt12_0112 {ECO:0000313|EMBL:RSV52161.1,
RC ECO:0000313|Proteomes:UP000286696}, SK-NIH.Pt14_0612
RC {ECO:0000313|EMBL:RSV36630.1, ECO:0000313|Proteomes:UP000287457},
RC SK-NIH.Pt16_1112 {ECO:0000313|EMBL:RSV45639.1,
RC ECO:0000313|Proteomes:UP000287806}, SK-NIH.Pt7_0906
RC {ECO:0000313|EMBL:RSV25349.1, ECO:0000313|Proteomes:UP000288528},
RC SK-NIH.Pt8_0208 {ECO:0000313|EMBL:RSV29368.1,
RC ECO:0000313|Proteomes:UP000287886}, SK-NIH.Pt9_0208
RC {ECO:0000313|EMBL:RSV09818.1, ECO:0000313|Proteomes:UP000287793}, and
RC SK-NY1_0417 {ECO:0000313|EMBL:RSU98017.1,
RC ECO:0000313|Proteomes:UP000288253};
RA Johnson R.C., Deming C., Conlan S., Zellmer C.J., Michelin A.V.,
RA Lee-Lin S., Thomas P.J., Park M., Weingarten R.A., Less J., Dekker J.P.,
RA Frank K.M., Musser K.A., Mcquiston J.R., Henderson D.K., Lau A.F.,
RA Palmore T.N., Segre J.A.;
RT "Genomic and Epidemiologic Investigation of an Indolent Hospital
RT Outbreak.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Couples transcription and DNA repair by recognizing RNA
CC polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent
CC release of RNAP and its truncated transcript from the DNA, and
CC recruitment of nucleotide excision repair machinery to the damaged
CC site. {ECO:0000256|HAMAP-Rule:MF_00969}.
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00969}.
CC -!- SIMILARITY: In the C-terminal section; belongs to the helicase family.
CC RecG subfamily. {ECO:0000256|HAMAP-Rule:MF_00969}.
CC -!- SIMILARITY: In the N-terminal section; belongs to the UvrB family.
CC {ECO:0000256|HAMAP-Rule:MF_00969}.
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DR EMBL; CP018820; APR52711.1; -; Genomic_DNA.
DR EMBL; QLJD01000006; RSU19212.1; -; Genomic_DNA.
DR EMBL; QLJF01000003; RSU28464.1; -; Genomic_DNA.
DR EMBL; QLJC01000002; RSU31214.1; -; Genomic_DNA.
DR EMBL; QLJI01000002; RSU38047.1; -; Genomic_DNA.
DR EMBL; QLJE01000004; RSU40111.1; -; Genomic_DNA.
DR EMBL; QLJJ01000002; RSU44206.1; -; Genomic_DNA.
DR EMBL; QLJG01000003; RSU51872.1; -; Genomic_DNA.
DR EMBL; QQWM01000012; RSU77202.1; -; Genomic_DNA.
DR EMBL; QQWL01000004; RSU82080.1; -; Genomic_DNA.
DR EMBL; QQWQ01000005; RSU88530.1; -; Genomic_DNA.
DR EMBL; QQWN01000007; RSU95421.1; -; Genomic_DNA.
DR EMBL; QQWP01000003; RSU98017.1; -; Genomic_DNA.
DR EMBL; QQWO01000011; RSV01829.1; -; Genomic_DNA.
DR EMBL; QQWS01000002; RSV09818.1; -; Genomic_DNA.
DR EMBL; QQWR01000004; RSV10224.1; -; Genomic_DNA.
DR EMBL; QQWU01000004; RSV25349.1; -; Genomic_DNA.
DR EMBL; QQWT01000004; RSV29368.1; -; Genomic_DNA.
DR EMBL; QQXA01000005; RSV36630.1; -; Genomic_DNA.
DR EMBL; QQXB01000008; RSV45639.1; -; Genomic_DNA.
DR EMBL; QQXD01000029; RSV52161.1; -; Genomic_DNA.
DR EMBL; QQXE01000001; RSV61806.1; -; Genomic_DNA.
DR EMBL; QQXG01000003; RSV65340.1; -; Genomic_DNA.
DR EMBL; QQXC01000006; RSW98138.1; -; Genomic_DNA.
DR EMBL; QQXR01000008; RSX06639.1; -; Genomic_DNA.
DR EMBL; QQXQ01000001; RSX11016.1; -; Genomic_DNA.
DR EMBL; QQXF01000002; RSX15829.1; -; Genomic_DNA.
DR EMBL; QQXS01000017; RSX18767.1; -; Genomic_DNA.
DR EMBL; QQXV01000001; RSX23263.1; -; Genomic_DNA.
DR EMBL; QQXU01000008; RSX27862.1; -; Genomic_DNA.
DR EMBL; QQXT01000003; RSX28945.1; -; Genomic_DNA.
DR EMBL; QQXW01000009; RSX37043.1; -; Genomic_DNA.
DR EMBL; QQXX01000003; RSX43472.1; -; Genomic_DNA.
DR EMBL; QQXY01000006; RSX45900.1; -; Genomic_DNA.
DR EMBL; QQYA01000003; RSX64226.1; -; Genomic_DNA.
DR EMBL; QQXZ01000013; RSX64729.1; -; Genomic_DNA.
DR EMBL; QQYD01000003; RSX67427.1; -; Genomic_DNA.
DR EMBL; QQYC01000008; RSX72195.1; -; Genomic_DNA.
DR EMBL; QQYB01000003; RSX80952.1; -; Genomic_DNA.
DR EMBL; QQYH01000007; RSX83028.1; -; Genomic_DNA.
DR EMBL; QQYF01000002; RSX91187.1; -; Genomic_DNA.
DR EMBL; QQYG01000002; RSX95780.1; -; Genomic_DNA.
DR EMBL; QQYE01000001; RSX99371.1; -; Genomic_DNA.
DR EMBL; QQYJ01000003; RSY02536.1; -; Genomic_DNA.
DR EMBL; QQYI01000002; RSY09820.1; -; Genomic_DNA.
DR EMBL; QQYN01000002; RSY14996.1; -; Genomic_DNA.
DR EMBL; QQYK01000003; RSY15255.1; -; Genomic_DNA.
DR EMBL; QQYL01000003; RSY22902.1; -; Genomic_DNA.
DR EMBL; QQYO01000006; RSY23896.1; -; Genomic_DNA.
DR EMBL; QQYM01000004; RSY29663.1; -; Genomic_DNA.
DR EMBL; QQYS01000003; RSY35495.1; -; Genomic_DNA.
DR EMBL; QQYQ01000004; RSY39970.1; -; Genomic_DNA.
DR EMBL; QQYR01000005; RSY45039.1; -; Genomic_DNA.
DR EMBL; QQYP01000002; RSY49405.1; -; Genomic_DNA.
DR EMBL; QQYU01000008; RSY52578.1; -; Genomic_DNA.
DR EMBL; QQYV01000007; RSY55188.1; -; Genomic_DNA.
DR EMBL; QQYW01000007; RSY60828.1; -; Genomic_DNA.
DR EMBL; QQYT01000004; RSY68386.1; -; Genomic_DNA.
DR EMBL; QQYX01000002; RSY73845.1; -; Genomic_DNA.
DR EMBL; QQYY01000002; RSY74241.1; -; Genomic_DNA.
DR EMBL; QQZB01000001; RSY86363.1; -; Genomic_DNA.
DR EMBL; QQZA01000002; RSY89131.1; -; Genomic_DNA.
DR EMBL; QQZD01000006; RSY95389.1; -; Genomic_DNA.
DR EMBL; QQZG01000010; RSY97251.1; -; Genomic_DNA.
DR EMBL; QQZE01000004; RSZ02054.1; -; Genomic_DNA.
DR EMBL; QQZF01000008; RSZ09402.1; -; Genomic_DNA.
DR EMBL; QQZC01000003; RSZ11806.1; -; Genomic_DNA.
DR EMBL; QQZH01000006; RSZ13796.1; -; Genomic_DNA.
DR EMBL; QQZI01000004; RSZ20847.1; -; Genomic_DNA.
DR RefSeq; WP_075151476.1; NZ_QQZI01000004.1.
DR AlphaFoldDB; A0A1L6J9U8; -.
DR STRING; 93064.BRX40_09995; -.
DR GeneID; 44132890; -.
DR KEGG; skr:BRX40_09995; -.
DR OrthoDB; 9804325at2; -.
DR Proteomes; UP000185161; Chromosome.
DR Proteomes; UP000286681; Unassembled WGS sequence.
DR Proteomes; UP000286696; Unassembled WGS sequence.
DR Proteomes; UP000286706; Unassembled WGS sequence.
DR Proteomes; UP000286739; Unassembled WGS sequence.
DR Proteomes; UP000286744; Unassembled WGS sequence.
DR Proteomes; UP000286760; Unassembled WGS sequence.
DR Proteomes; UP000286788; Unassembled WGS sequence.
DR Proteomes; UP000286792; Unassembled WGS sequence.
DR Proteomes; UP000286795; Unassembled WGS sequence.
DR Proteomes; UP000286970; Unassembled WGS sequence.
DR Proteomes; UP000287001; Unassembled WGS sequence.
DR Proteomes; UP000287015; Unassembled WGS sequence.
DR Proteomes; UP000287020; Unassembled WGS sequence.
DR Proteomes; UP000287028; Unassembled WGS sequence.
DR Proteomes; UP000287038; Unassembled WGS sequence.
DR Proteomes; UP000287073; Unassembled WGS sequence.
DR Proteomes; UP000287083; Unassembled WGS sequence.
DR Proteomes; UP000287090; Unassembled WGS sequence.
DR Proteomes; UP000287165; Unassembled WGS sequence.
DR Proteomes; UP000287229; Unassembled WGS sequence.
DR Proteomes; UP000287236; Unassembled WGS sequence.
DR Proteomes; UP000287257; Unassembled WGS sequence.
DR Proteomes; UP000287271; Unassembled WGS sequence.
DR Proteomes; UP000287307; Unassembled WGS sequence.
DR Proteomes; UP000287315; Unassembled WGS sequence.
DR Proteomes; UP000287340; Unassembled WGS sequence.
DR Proteomes; UP000287347; Unassembled WGS sequence.
DR Proteomes; UP000287360; Unassembled WGS sequence.
DR Proteomes; UP000287363; Unassembled WGS sequence.
DR Proteomes; UP000287377; Unassembled WGS sequence.
DR Proteomes; UP000287414; Unassembled WGS sequence.
DR Proteomes; UP000287417; Unassembled WGS sequence.
DR Proteomes; UP000287457; Unassembled WGS sequence.
DR Proteomes; UP000287482; Unassembled WGS sequence.
DR Proteomes; UP000287513; Unassembled WGS sequence.
DR Proteomes; UP000287541; Unassembled WGS sequence.
DR Proteomes; UP000287577; Unassembled WGS sequence.
DR Proteomes; UP000287793; Unassembled WGS sequence.
DR Proteomes; UP000287799; Unassembled WGS sequence.
DR Proteomes; UP000287806; Unassembled WGS sequence.
DR Proteomes; UP000287812; Unassembled WGS sequence.
DR Proteomes; UP000287844; Unassembled WGS sequence.
DR Proteomes; UP000287886; Unassembled WGS sequence.
DR Proteomes; UP000287968; Unassembled WGS sequence.
DR Proteomes; UP000287976; Unassembled WGS sequence.
DR Proteomes; UP000288007; Unassembled WGS sequence.
DR Proteomes; UP000288050; Unassembled WGS sequence.
DR Proteomes; UP000288130; Unassembled WGS sequence.
DR Proteomes; UP000288181; Unassembled WGS sequence.
DR Proteomes; UP000288198; Unassembled WGS sequence.
DR Proteomes; UP000288203; Unassembled WGS sequence.
DR Proteomes; UP000288207; Unassembled WGS sequence.
DR Proteomes; UP000288230; Unassembled WGS sequence.
DR Proteomes; UP000288253; Unassembled WGS sequence.
DR Proteomes; UP000288258; Unassembled WGS sequence.
DR Proteomes; UP000288269; Unassembled WGS sequence.
DR Proteomes; UP000288283; Unassembled WGS sequence.
DR Proteomes; UP000288286; Unassembled WGS sequence.
DR Proteomes; UP000288342; Unassembled WGS sequence.
DR Proteomes; UP000288435; Unassembled WGS sequence.
DR Proteomes; UP000288516; Unassembled WGS sequence.
DR Proteomes; UP000288528; Unassembled WGS sequence.
DR Proteomes; UP000288535; Unassembled WGS sequence.
DR Proteomes; UP000288569; Unassembled WGS sequence.
DR Proteomes; UP000288581; Unassembled WGS sequence.
DR Proteomes; UP000288630; Unassembled WGS sequence.
DR Proteomes; UP000288648; Unassembled WGS sequence.
DR Proteomes; UP000288649; Unassembled WGS sequence.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-UniRule.
DR GO; GO:0003684; F:damaged DNA binding; IEA:InterPro.
DR GO; GO:0004386; F:helicase activity; IEA:UniProtKB-KW.
DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:UniProtKB-UniRule.
DR GO; GO:0000716; P:transcription-coupled nucleotide-excision repair, DNA damage recognition; IEA:UniProtKB-UniRule.
DR CDD; cd17991; DEXHc_TRCF; 1.
DR Gene3D; 2.40.10.170; -; 1.
DR Gene3D; 3.40.50.11140; -; 1.
DR Gene3D; 3.40.50.11180; -; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 2.
DR Gene3D; 3.30.2060.10; Penicillin-binding protein 1b domain; 1.
DR Gene3D; 3.90.1150.50; Transcription-repair-coupling factor, D7 domain; 1.
DR HAMAP; MF_00969; TRCF; 1.
DR InterPro; IPR003711; CarD-like/TRCF_RID.
DR InterPro; IPR036101; CarD-like/TRCF_RID_sf.
DR InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR004576; Mfd.
DR InterPro; IPR048635; MFD_D3.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR047112; RecG/Mfd.
DR InterPro; IPR037235; TRCF-like_C_D7.
DR InterPro; IPR005118; TRCF_C.
DR InterPro; IPR041471; UvrB_inter.
DR NCBIfam; TIGR00580; mfd; 1.
DR PANTHER; PTHR47964; ATP-DEPENDENT DNA HELICASE HOMOLOG RECG, CHLOROPLASTIC; 1.
DR PANTHER; PTHR47964:SF1; ATP-DEPENDENT DNA HELICASE HOMOLOG RECG, CHLOROPLASTIC; 1.
DR Pfam; PF02559; CarD_TRCF_RID; 1.
DR Pfam; PF00270; DEAD; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR Pfam; PF21132; MFD_D3; 1.
DR Pfam; PF03461; TRCF; 1.
DR Pfam; PF17757; UvrB_inter; 1.
DR SMART; SM01058; CarD_TRCF; 1.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM00490; HELICc; 1.
DR SMART; SM00982; TRCF; 1.
DR SUPFAM; SSF141259; CarD-like; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 4.
DR SUPFAM; SSF143517; TRCF domain-like; 1.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
PE 3: Inferred from homology;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840, ECO:0000256|HAMAP-
KW Rule:MF_00969}; Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00969};
KW DNA damage {ECO:0000256|ARBA:ARBA00022763, ECO:0000256|HAMAP-
KW Rule:MF_00969};
KW DNA repair {ECO:0000256|ARBA:ARBA00023204, ECO:0000256|HAMAP-
KW Rule:MF_00969};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125, ECO:0000256|HAMAP-
KW Rule:MF_00969}; Helicase {ECO:0000256|ARBA:ARBA00022806};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801, ECO:0000256|HAMAP-Rule:MF_00969};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741, ECO:0000256|HAMAP-
KW Rule:MF_00969}; Reference proteome {ECO:0000313|Proteomes:UP000185161}.
FT DOMAIN 626..787
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000259|PROSITE:PS51192"
FT DOMAIN 808..962
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000259|PROSITE:PS51194"
SQ SEQUENCE 1157 AA; 126918 MW; 9951719C5BD4D337 CRC64;
MPDLNQILSA KAPLTLSGVP AGFLPWLLAD LARASTTGAV YIAPDESAMR AVAATATYFA
PELEIIQFPA WDCLPYDRAS PTLRVMAERM AALAALQGKT SKPRLILTTV NAATQRTLTP
FRIRQMTARL APGERISLDK LATLLSSNGY VRTDTVHDSG EFAVRGGLVD LFPSGSEQGL
RLDFFGDEIE SVRTFDPADQ RTTGRVDGFT LLPASEALLD EDTIKRFRTR YREKFGATAT
GDPLYQAISD GRRLAGMEHW LPLFEERMET LFEHLPEGAV IVRDSGDAGA AESRFEAIAD
YQANRVRAQS TDAGSYRPLG TDQLYLLPAE WETRLKTARA HLATPFHEPE SATVLDFNVD
GPRDFAPERA AQSNIYEAVT DHLGKLRKAG RKPILASYSI GSRERLKGLL GDHGLPNAVF
AESWQEALGV AAGGRDSGNV ALIVLPLDHG FTSPEVALLT EQDMLGDRLV RRNKRKKSTD
AFLAELATLS PGDLVVHLEH GIGRYEGLTQ IPVQKAPHDC VALTYAGGDK LYVPVENLEV
LSRYGSSEEG ASLDRLGGEA WQRRKSKMKE RIREIAGELI ATAAARALRP AEVAETDPGS
YPVFVDRFPF TETDDQDRAI GDVLEDLSAG KPMDRLVVGD VGFGKTEVAL RAAFVAAMAG
MQVAVVCPTT LLARQHFTNF VARFEGFPIR IGRLSRLVPA AEAKATKEGI ENGQIDILVG
THAVLAKGIA FKRLGLVIVD EEQRFGVTHK ERLKALKTDV HMLTLTATPI PRTLQMAMSG
LRELSVIQTP PVDRLAVRTY VMPWDPVVLR EALLREHYRG GQSFIVTPRV ADLPDIETFL
REEVPEVRYV VAHGQMAAGE VEERMSAFYD RKYEVLVSTT IIESGLDIPS ANTMIVNRAD
RFGLAQLYQL RGRVGRAKTR AYAYMTTPPQ RLMTEAAEKR LKVLSDLESL GAGFQLASHD
LDIRGAGNLL GDEQSGHIKE VGYELYQSML EEAIMDAKAG GLASERPRDL SPQITVDAPI
LIPEGFVPDL DLRMGLYRRL NEVEDKRGID EFAAEMIDRF GKLPEETENL LLLIEAKLNA
KRACIAKIDV GPKGALVSFH EDSFPSVEGL MAYVAKLEGT AKLRPDMKLV ISRAWATPRA
RLNAVVQLSR GLAKAAG
//
