ID A0A1M4T4E4_9FIRM Unreviewed; 538 AA.
AC A0A1M4T4E4;
DT 15-MAR-2017, integrated into UniProtKB/TrEMBL.
DT 15-MAR-2017, sequence version 1.
DT 27-MAR-2024, entry version 26.
DE SubName: Full=PAS domain S-box-containing protein {ECO:0000313|EMBL:SHE39265.1};
GN ORFNames=SAMN02745218_00227 {ECO:0000313|EMBL:SHE39265.1};
OS Desulfofundulus australicus DSM 11792.
OC Bacteria; Bacillota; Clostridia; Eubacteriales; Peptococcaceae;
OC Desulfofundulus.
OX NCBI_TaxID=1121425 {ECO:0000313|EMBL:SHE39265.1, ECO:0000313|Proteomes:UP000184196};
RN [1] {ECO:0000313|EMBL:SHE39265.1, ECO:0000313|Proteomes:UP000184196}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=DSM 11792 {ECO:0000313|EMBL:SHE39265.1,
RC ECO:0000313|Proteomes:UP000184196};
RA Jaros S., Januszkiewicz K., Wedrychowicz H.;
RL Submitted (NOV-2016) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; FQUW01000005; SHE39265.1; -; Genomic_DNA.
DR RefSeq; WP_073162550.1; NZ_FQUW01000005.1.
DR AlphaFoldDB; A0A1M4T4E4; -.
DR OrthoDB; 9803970at2; -.
DR Proteomes; UP000184196; Unassembled WGS sequence.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016887; F:ATP hydrolysis activity; IEA:InterPro.
DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd00009; AAA; 1.
DR CDD; cd00130; PAS; 1.
DR Gene3D; 1.10.8.60; -; 1.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR Gene3D; 3.30.450.20; PAS domain; 1.
DR InterPro; IPR003593; AAA+_ATPase.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR002197; HTH_Fis.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR000014; PAS.
DR InterPro; IPR035965; PAS-like_dom_sf.
DR InterPro; IPR013656; PAS_4.
DR InterPro; IPR002078; Sigma_54_int.
DR InterPro; IPR025662; Sigma_54_int_dom_ATP-bd_1.
DR InterPro; IPR025943; Sigma_54_int_dom_ATP-bd_2.
DR InterPro; IPR025944; Sigma_54_int_dom_CS.
DR NCBIfam; TIGR00229; sensory_box; 1.
DR PANTHER; PTHR32071:SF57; SIGMA L-DEPENDENT TRANSCRIPTIONAL REGULATOR YQIR-RELATED; 1.
DR PANTHER; PTHR32071; TRANSCRIPTIONAL REGULATORY PROTEIN; 1.
DR Pfam; PF02954; HTH_8; 1.
DR Pfam; PF08448; PAS_4; 1.
DR Pfam; PF00158; Sigma54_activat; 1.
DR PRINTS; PR01590; HTHFIS.
DR SMART; SM00382; AAA; 1.
DR SMART; SM00091; PAS; 1.
DR SUPFAM; SSF46689; Homeodomain-like; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR SUPFAM; SSF55785; PYP-like sensor domain (PAS domain); 1.
DR PROSITE; PS50112; PAS; 1.
DR PROSITE; PS00675; SIGMA54_INTERACT_1; 1.
DR PROSITE; PS00676; SIGMA54_INTERACT_2; 1.
DR PROSITE; PS00688; SIGMA54_INTERACT_3; 1.
DR PROSITE; PS50045; SIGMA54_INTERACT_4; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 78..129
FT /note="PAS"
FT /evidence="ECO:0000259|PROSITE:PS50112"
FT DOMAIN 218..448
FT /note="Sigma-54 factor interaction"
FT /evidence="ECO:0000259|PROSITE:PS50045"
SQ SEQUENCE 538 AA; 60452 MW; 40A4124BDCB057D2 CRC64;
MYLEKRLLVR DFLVEPGSED DLTDFIPQGE EILDQHILSI IPILREKNIA VMDSSGAVTG
LLIMERVVER LVDFVRETEA ALTAVLGVTD DVICMIDNQE NVTGWNRKAE LLYGIKGQDI
LGRSIHDFFT NLVVTRVCRE DREVYAEYHQ PRQDTHVLIN SVPIRRDGRV IGGVSAEKDV
TEVIQLNRAL SRASYQVKCL KEAIQKNEIK RVDPFTKLYG HHPRLKAMVD VARRAAPTDA
TVLIRGESGT GKEILARAIH EASDRAGKPF VVVNCGAIPA ELFESEIFGY EQGAFTGAGP
RGKPGLLEMA NEGTVFLDEI GELPLNLQVK LLRVLQERVF YRVGGSRPVS VNIRIIAATN
RHLEEMVSSG EFREDLYYRL NVISIEMPPL RERRSDIPEL LYRFLQEYCQ LYGKEISKVE
PGVVAALLSY SWPGNVRELK NTVERMVVLA EGEVITEKDL PKYLREHALG FGAAAREFPP
DLNVAARETE KEIILKALKE AGGNRTVTAR LLGLPRSTLY YKMNRLGILG TKKSLPKH
//
