ID A0A1M4UKB1_9FLAO Unreviewed; 522 AA.
AC A0A1M4UKB1;
DT 15-MAR-2017, integrated into UniProtKB/TrEMBL.
DT 15-MAR-2017, sequence version 1.
DT 24-JAN-2024, entry version 25.
DE RecName: Full=Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335};
DE Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};
DE EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};
GN Name=rny {ECO:0000256|HAMAP-Rule:MF_00335};
GN ORFNames=SAMN05443633_101530 {ECO:0000313|EMBL:SHE57127.1};
OS Chryseobacterium arachidis.
OC Bacteria; Bacteroidota; Flavobacteriia; Flavobacteriales; Weeksellaceae;
OC Chryseobacterium group; Chryseobacterium.
OX NCBI_TaxID=1416778 {ECO:0000313|EMBL:SHE57127.1, ECO:0000313|Proteomes:UP000184518};
RN [1] {ECO:0000313|EMBL:SHE57127.1, ECO:0000313|Proteomes:UP000184518}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=DSM 27619 {ECO:0000313|EMBL:SHE57127.1,
RC ECO:0000313|Proteomes:UP000184518};
RA Jaros S., Januszkiewicz K., Wedrychowicz H.;
RL Submitted (NOV-2016) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Endoribonuclease that initiates mRNA decay.
CC {ECO:0000256|HAMAP-Rule:MF_00335}.
CC -!- SIMILARITY: Belongs to the RNase Y family. {ECO:0000256|HAMAP-
CC Rule:MF_00335}.
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DR EMBL; FQUT01000001; SHE57127.1; -; Genomic_DNA.
DR RefSeq; WP_072953054.1; NZ_FQUT01000001.1.
DR AlphaFoldDB; A0A1M4UKB1; -.
DR STRING; 1416778.SAMN05443633_101530; -.
DR OrthoDB; 9803205at2; -.
DR Proteomes; UP000184518; Unassembled WGS sequence.
DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-UniRule.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0004521; F:RNA endonuclease activity; IEA:UniProtKB-UniRule.
DR GO; GO:0006402; P:mRNA catabolic process; IEA:UniProtKB-UniRule.
DR CDD; cd00077; HDc; 1.
DR CDD; cd22431; KH-I_RNaseY; 1.
DR Gene3D; 1.10.3210.10; Hypothetical protein af1432; 1.
DR Gene3D; 3.30.1370.10; K Homology domain, type 1; 1.
DR HAMAP; MF_00335; RNase_Y; 1.
DR InterPro; IPR003607; HD/PDEase_dom.
DR InterPro; IPR006674; HD_domain.
DR InterPro; IPR006675; HDIG_dom.
DR InterPro; IPR004087; KH_dom.
DR InterPro; IPR004088; KH_dom_type_1.
DR InterPro; IPR036612; KH_dom_type_1_sf.
DR InterPro; IPR017705; Ribonuclease_Y.
DR InterPro; IPR022711; RNase_Y_N.
DR NCBIfam; TIGR00277; HDIG; 1.
DR NCBIfam; TIGR03319; RNase_Y; 1.
DR PANTHER; PTHR12826; RIBONUCLEASE Y; 1.
DR PANTHER; PTHR12826:SF15; RIBONUCLEASE Y; 1.
DR Pfam; PF01966; HD; 1.
DR Pfam; PF00013; KH_1; 1.
DR Pfam; PF12072; RNase_Y_N; 1.
DR SMART; SM00471; HDc; 1.
DR SMART; SM00322; KH; 1.
DR SUPFAM; SSF54791; Eukaryotic type KH-domain (KH-domain type I); 1.
DR SUPFAM; SSF109604; HD-domain/PDEase-like; 1.
DR PROSITE; PS51831; HD; 1.
DR PROSITE; PS50084; KH_TYPE_1; 1.
PE 3: Inferred from homology;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Endonuclease {ECO:0000256|ARBA:ARBA00022759, ECO:0000256|HAMAP-
KW Rule:MF_00335};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801, ECO:0000256|HAMAP-Rule:MF_00335};
KW Nuclease {ECO:0000256|ARBA:ARBA00022722, ECO:0000256|HAMAP-Rule:MF_00335};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884, ECO:0000256|HAMAP-
KW Rule:MF_00335}.
FT DOMAIN 338..431
FT /note="HD"
FT /evidence="ECO:0000259|PROSITE:PS51831"
FT COILED 39..148
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 522 AA; 58080 MW; C281BB1149EC8839 CRC64;
MTTAIIVGVI CLVIGAVIGI VFSKSSLNTK GKFIIDDAKK NAENLIEKAT VQAESIKKEK
NLQAKEKFLE LKSQHDADIQ SREKKMQEIE KRIKDKEHKL NDELSKTGKL EKDLDKQIAD
YAKKTEILER KQQELDTATA KKVEILEKIS NYSAEEAKAE LVESLKAEAK TRAQAHVQGI
MEEAQLNAKS EARKIVIQTI QRIGTEQAIE NSVSVFNIES DEVKGRIIGR EGRNIRALEA
VTGVEIIVDD TPEAILLSCF DPVRREIARL SLHRLVTDGR IHPARIEEVV EKTRKQIEEE
IIEVGKRTII DLGIHGLHPE LIKIVGRMKY RSSYGQNLLQ HSREVANIAA TMAAELGLNV
KLAKRAGLLH DIGKVPEQES ELPHALLGMQ WAEKYGENAE VVNAIGAHHD EVEMTSLLSP
IIQVADAISG ARPGARRQVL ESYIQRLKDL ESAALSFDGV SSAYAIQAGR ELRVMVESGK
VNDEVASQLS YDISEKIQNE LTYPGQVKVT VIRETRAVNI AR
//
