ID A0A1M5FX44_9FLAO Unreviewed; 488 AA.
AC A0A1M5FX44;
DT 15-MAR-2017, integrated into UniProtKB/TrEMBL.
DT 15-MAR-2017, sequence version 1.
DT 24-JAN-2024, entry version 38.
DE SubName: Full=RNA polymerase, sigma 54 subunit, RpoN/SigL {ECO:0000313|EMBL:SHF95761.1};
GN ORFNames=SAMN05444396_10393 {ECO:0000313|EMBL:SHF95761.1};
OS Flavobacterium segetis.
OC Bacteria; Bacteroidota; Flavobacteriia; Flavobacteriales;
OC Flavobacteriaceae; Flavobacterium.
OX NCBI_TaxID=271157 {ECO:0000313|EMBL:SHF95761.1, ECO:0000313|Proteomes:UP000184036};
RN [1] {ECO:0000313|Proteomes:UP000184036}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=DSM 19741 {ECO:0000313|Proteomes:UP000184036};
RA Varghese N., Submissions S.;
RL Submitted (NOV-2016) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the sigma-54 factor family.
CC {ECO:0000256|ARBA:ARBA00008798}.
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DR EMBL; FQWE01000003; SHF95761.1; -; Genomic_DNA.
DR RefSeq; WP_072988989.1; NZ_FQWE01000003.1.
DR AlphaFoldDB; A0A1M5FX44; -.
DR STRING; 271157.SAMN05444396_10393; -.
DR OrthoDB; 9814402at2; -.
DR Proteomes; UP000184036; Unassembled WGS sequence.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0001216; F:DNA-binding transcription activator activity; IEA:InterPro.
DR GO; GO:0016779; F:nucleotidyltransferase activity; IEA:UniProtKB-KW.
DR GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 1.10.10.1330; RNA polymerase sigma-54 factor, core-binding domain; 1.
DR InterPro; IPR000394; RNA_pol_sigma_54.
DR InterPro; IPR007046; RNA_pol_sigma_54_core-bd.
DR InterPro; IPR007634; RNA_pol_sigma_54_DNA-bd.
DR InterPro; IPR038709; RpoN_core-bd_sf.
DR NCBIfam; TIGR02395; rpoN_sigma; 1.
DR PANTHER; PTHR32248; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR PANTHER; PTHR32248:SF4; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR Pfam; PF00309; Sigma54_AID; 1.
DR Pfam; PF04963; Sigma54_CBD; 1.
DR Pfam; PF04552; Sigma54_DBD; 1.
DR PIRSF; PIRSF000774; RpoN; 1.
DR PRINTS; PR00045; SIGMA54FCT.
DR PROSITE; PS00718; SIGMA54_2; 1.
DR PROSITE; PS50044; SIGMA54_3; 1.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478};
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW Sigma factor {ECO:0000256|ARBA:ARBA00023082};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT DOMAIN 114..306
FT /note="RNA polymerase sigma factor 54 core-binding"
FT /evidence="ECO:0000259|Pfam:PF04963"
FT DOMAIN 328..487
FT /note="RNA polymerase sigma factor 54 DNA-binding"
FT /evidence="ECO:0000259|Pfam:PF04552"
FT REGION 44..111
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 52..87
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 488 AA; 56548 MW; ED6FBCB502ECD423 CRC64;
MLKQFLNLKL SQKLSPQQIQ LMKLIQLPTQ AFEQRLLEEM NENPALEAGK EEDDFEKDEF
ENEDYDDYDD AESERIDAED INIDEYLSND ETPDYKTQAN NYSDDDEDRE TPFAAPVSFH
QDLINQLNTF ILNDEEREIA EFLVGSIDDM GYIRRSVSDM VDDMAFTQGI YTDEEKVEKM
MHVIHELEPS GVGARDLQEC LLLQLKHKTP TESVELATDI IENQFDAFTK KHYDKLIQKY
GVSTEQLKKA VHEIEKLNPK PGGAFTGNNK ITENVVPDFA IRIVDGELEL TLNGRNAPTL
HVSKDYQEMM QTYKDSRDKS AQQKDAVQFI KQKLDSAKWF IDAIRQRQET LFVTMNAIMH
YQEEFFLDGD ETKLKPMILK DIADMVNLDI STISRVANSK YVETPYGTKL IKEFFSESMK
NDQGEDVSTL EIKKILQNTI EEEDKKKPLP DDQLAEILKD KGYPIARRTI AKYREQLDIP
VARMRKKI
//
