ID A0A1M6DUA9_9FLAO Unreviewed; 486 AA.
AC A0A1M6DUA9;
DT 15-MAR-2017, integrated into UniProtKB/TrEMBL.
DT 15-MAR-2017, sequence version 1.
DT 24-JAN-2024, entry version 28.
DE SubName: Full=RNA polymerase, sigma 54 subunit, RpoN/SigL {ECO:0000313|EMBL:SHI76846.1};
GN ORFNames=SAMN05216261_1753 {ECO:0000313|EMBL:SHI76846.1};
OS Algibacter luteus.
OC Bacteria; Bacteroidota; Flavobacteriia; Flavobacteriales;
OC Flavobacteriaceae; Algibacter.
OX NCBI_TaxID=1178825 {ECO:0000313|EMBL:SHI76846.1, ECO:0000313|Proteomes:UP000184396};
RN [1] {ECO:0000313|EMBL:SHI76846.1, ECO:0000313|Proteomes:UP000184396}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=CGMCC 1.12213 {ECO:0000313|EMBL:SHI76846.1,
RC ECO:0000313|Proteomes:UP000184396};
RA Jaros S., Januszkiewicz K., Wedrychowicz H.;
RL Submitted (NOV-2016) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the sigma-54 factor family.
CC {ECO:0000256|ARBA:ARBA00008798}.
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DR EMBL; FQYK01000003; SHI76846.1; -; Genomic_DNA.
DR RefSeq; WP_019386708.1; NZ_FQYK01000003.1.
DR AlphaFoldDB; A0A1M6DUA9; -.
DR STRING; 1178825.SAMN05216261_1753; -.
DR eggNOG; COG1508; Bacteria.
DR OrthoDB; 9814402at2; -.
DR Proteomes; UP000184396; Unassembled WGS sequence.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0001216; F:DNA-binding transcription activator activity; IEA:InterPro.
DR GO; GO:0016779; F:nucleotidyltransferase activity; IEA:UniProtKB-KW.
DR GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 1.10.10.1330; RNA polymerase sigma-54 factor, core-binding domain; 1.
DR InterPro; IPR000394; RNA_pol_sigma_54.
DR InterPro; IPR007046; RNA_pol_sigma_54_core-bd.
DR InterPro; IPR007634; RNA_pol_sigma_54_DNA-bd.
DR InterPro; IPR038709; RpoN_core-bd_sf.
DR NCBIfam; TIGR02395; rpoN_sigma; 1.
DR PANTHER; PTHR32248; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR PANTHER; PTHR32248:SF4; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR Pfam; PF00309; Sigma54_AID; 1.
DR Pfam; PF04963; Sigma54_CBD; 1.
DR Pfam; PF04552; Sigma54_DBD; 1.
DR PIRSF; PIRSF000774; RpoN; 1.
DR PRINTS; PR00045; SIGMA54FCT.
DR PROSITE; PS00718; SIGMA54_2; 1.
DR PROSITE; PS50044; SIGMA54_3; 1.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478};
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW Reference proteome {ECO:0000313|Proteomes:UP000184396};
KW Sigma factor {ECO:0000256|ARBA:ARBA00023082};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT DOMAIN 113..304
FT /note="RNA polymerase sigma factor 54 core-binding"
FT /evidence="ECO:0000259|Pfam:PF04963"
FT DOMAIN 327..484
FT /note="RNA polymerase sigma factor 54 DNA-binding"
FT /evidence="ECO:0000259|Pfam:PF04552"
FT REGION 43..75
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 88..107
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 43..57
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 58..73
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 486 AA; 56104 MW; B040A99F9DE0F65C CRC64;
MLKQHLQFKL SQKLSPQQIQ LMKLIQLPTQ AFEQRLKQEL EENPALEGGK EESQNELDSD
FDNSNDEYDN NDSINTEDIN VDEYLSDDEI PDYRTQANNY SSDDEERTMP YAAGTSFTQH
LINQLNTYRL SEDEREIAEF LVGSVDESGY IRRELTDIMD DLAFTQNVYT TEEKIEKVLK
IVHQLDPAGV GARNLKECLS IQLHRKEKTV DTELAINIID NAFDQFTKKH YKKLLQKFNI
SETQLKGAIS EIEHLNPKPG GSYAGNNRIV EHVVPDFAIK IVEGELELTL NGRNAPELHV
SREYNNMLKG YKDSKDKSKS QKDAVLFIKQ KLDAAKWFIE AIKQRQQTLF VTMSAIMHYQ
KEYFLTGDER NLKPMILKDI ADEINMDVST VSRVANSKYV DTPYGTKLIK EFFSESMKND
QGEDVSTREI KKILETVIEE ENKKKPLTDE NLASILKEKG YPIARRTVAK YREQLDIPVA
RLRKKI
//
