ID A0A1M6I6B4_MALRU Unreviewed; 572 AA.
AC A0A1M6I6B4;
DT 15-MAR-2017, integrated into UniProtKB/TrEMBL.
DT 15-MAR-2017, sequence version 1.
DT 24-JAN-2024, entry version 27.
DE SubName: Full=PAS domain S-box-containing protein {ECO:0000313|EMBL:SHJ29977.1};
GN ORFNames=SAMN02745165_02030 {ECO:0000313|EMBL:SHJ29977.1};
OS Malonomonas rubra DSM 5091.
OC Bacteria; Thermodesulfobacteriota; Desulfuromonadia; Desulfuromonadales;
OC Geopsychrobacteraceae; Malonomonas.
OX NCBI_TaxID=1122189 {ECO:0000313|EMBL:SHJ29977.1, ECO:0000313|Proteomes:UP000184171};
RN [1] {ECO:0000313|EMBL:SHJ29977.1, ECO:0000313|Proteomes:UP000184171}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=DSM 5091 {ECO:0000313|EMBL:SHJ29977.1,
RC ECO:0000313|Proteomes:UP000184171};
RA Jaros S., Januszkiewicz K., Wedrychowicz H.;
RL Submitted (NOV-2016) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; FQZT01000006; SHJ29977.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A1M6I6B4; -.
DR STRING; 1122189.SAMN02745165_02030; -.
DR OrthoDB; 9814761at2; -.
DR Proteomes; UP000184171; Unassembled WGS sequence.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016887; F:ATP hydrolysis activity; IEA:InterPro.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd00009; AAA; 1.
DR CDD; cd00130; PAS; 1.
DR Gene3D; 1.10.8.60; -; 1.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR Gene3D; 3.30.450.20; PAS domain; 2.
DR InterPro; IPR003593; AAA+_ATPase.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR030828; HTH_TypR.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR000014; PAS.
DR InterPro; IPR000700; PAS-assoc_C.
DR InterPro; IPR035965; PAS-like_dom_sf.
DR InterPro; IPR013656; PAS_4.
DR InterPro; IPR002078; Sigma_54_int.
DR InterPro; IPR025662; Sigma_54_int_dom_ATP-bd_1.
DR InterPro; IPR025943; Sigma_54_int_dom_ATP-bd_2.
DR InterPro; IPR025944; Sigma_54_int_dom_CS.
DR NCBIfam; TIGR00229; sensory_box; 1.
DR PANTHER; PTHR32071:SF57; SIGMA L-DEPENDENT TRANSCRIPTIONAL REGULATOR YQIR-RELATED; 1.
DR PANTHER; PTHR32071; TRANSCRIPTIONAL REGULATORY PROTEIN; 1.
DR Pfam; PF18024; HTH_50; 1.
DR Pfam; PF08448; PAS_4; 1.
DR Pfam; PF00158; Sigma54_activat; 1.
DR SMART; SM00382; AAA; 1.
DR SMART; SM00091; PAS; 2.
DR SUPFAM; SSF46689; Homeodomain-like; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR SUPFAM; SSF55785; PYP-like sensor domain (PAS domain); 1.
DR PROSITE; PS50113; PAC; 1.
DR PROSITE; PS50112; PAS; 1.
DR PROSITE; PS00675; SIGMA54_INTERACT_1; 1.
DR PROSITE; PS00676; SIGMA54_INTERACT_2; 1.
DR PROSITE; PS00688; SIGMA54_INTERACT_3; 1.
DR PROSITE; PS50045; SIGMA54_INTERACT_4; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Coiled coil {ECO:0000256|SAM:Coils};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000184171};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 118..169
FT /note="PAS"
FT /evidence="ECO:0000259|PROSITE:PS50112"
FT DOMAIN 186..236
FT /note="PAC"
FT /evidence="ECO:0000259|PROSITE:PS50113"
FT DOMAIN 261..490
FT /note="Sigma-54 factor interaction"
FT /evidence="ECO:0000259|PROSITE:PS50045"
FT COILED 220..247
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 572 AA; 63786 MW; 7F94CFAC1BAC3D0B CRC64;
MNHTLSIDAL LDATARAIFT VNAAGLIIHA SHLARQSLHI EPGENLLEQL PDFWPQVKKT
LSGQSPQQAL PLHMRQDEYF VDINPLLVDG DIIGVACTLV DSQQLERMTS KLPSFQTLSR
ELDTIIDSSS DGLFVCDADA NVIRVNPASE RIHKISAREL IGRNMRELVE SGFIDRSAAL
ETSLTKKPVS QLQNKDGRKL ISISTPVFDE MGELIRIVVS ERDITEIDTL QRELEDKEAL
NDQFRDQMLA MQHAELDAKQ IIARSPEMIR ALQQAVRVAG ADSSVLVLGE SGVGKGLIAD
LIHKNSRRAD NPLIKINCGA IPESLIEAEL FGYEKGAFTG AQANGKPGHF ELADGGTLFL
DEIAELPLPS QVKLLRFLED GRITRLGGTS SKNVDVRVLA ATHRDLEQMV KEGRFRLDLY
YRLNVIPIQV PAVRERRDCV VPLIRHYIEL FSEQVGSKKR LTRAALDTLA NYPFPGNVRE
LMNICERLVV MSETESIDIS DLPAQIVERA ERLNVNSVEW QEGMSLQDAL DRVEKSILEK
AQKRFGNQTE IAKALGVNQS TIARKLKRHQ LN
//
