ID   A0A1M6TC82_9AQUI        Unreviewed;       375 AA.
AC   A0A1M6TC82;
DT   15-MAR-2017, integrated into UniProtKB/TrEMBL.
DT   15-MAR-2017, sequence version 1.
DT   24-JAN-2024, entry version 26.
DE   SubName: Full=RNA polymerase, sigma 54 subunit, RpoN/SigL {ECO:0000313|EMBL:SHK54378.1};
GN   ORFNames=SAMN05444391_1386 {ECO:0000313|EMBL:SHK54378.1};
OS   Thermocrinis minervae.
OC   Bacteria; Aquificota; Aquificae; Aquificales; Aquificaceae; Thermocrinis.
OX   NCBI_TaxID=381751 {ECO:0000313|EMBL:SHK54378.1, ECO:0000313|Proteomes:UP000189810};
RN   [1] {ECO:0000313|EMBL:SHK54378.1, ECO:0000313|Proteomes:UP000189810}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=DSM 19557 {ECO:0000313|EMBL:SHK54378.1,
RC   ECO:0000313|Proteomes:UP000189810};
RA   Jaros S., Januszkiewicz K., Wedrychowicz H.;
RL   Submitted (NOV-2016) to the EMBL/GenBank/DDBJ databases.
CC   -!- SIMILARITY: Belongs to the sigma-54 factor family.
CC       {ECO:0000256|ARBA:ARBA00008798}.
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DR   EMBL; LT670846; SHK54378.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A1M6TC82; -.
DR   STRING; 381751.SAMN05444391_1386; -.
DR   Proteomes; UP000189810; Chromosome i.
DR   GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0001216; F:DNA-binding transcription activator activity; IEA:InterPro.
DR   GO; GO:0016779; F:nucleotidyltransferase activity; IEA:UniProtKB-KW.
DR   GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR   GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR   Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR   Gene3D; 1.10.10.1330; RNA polymerase sigma-54 factor, core-binding domain; 1.
DR   InterPro; IPR000394; RNA_pol_sigma_54.
DR   InterPro; IPR007046; RNA_pol_sigma_54_core-bd.
DR   InterPro; IPR007634; RNA_pol_sigma_54_DNA-bd.
DR   InterPro; IPR038709; RpoN_core-bd_sf.
DR   PANTHER; PTHR32248; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR   PANTHER; PTHR32248:SF4; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR   Pfam; PF04963; Sigma54_CBD; 1.
DR   Pfam; PF04552; Sigma54_DBD; 1.
DR   PIRSF; PIRSF000774; RpoN; 3.
DR   PRINTS; PR00045; SIGMA54FCT.
DR   PROSITE; PS00718; SIGMA54_2; 1.
DR   PROSITE; PS50044; SIGMA54_3; 1.
PE   3: Inferred from homology;
KW   DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW   DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478};
KW   Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW   Reference proteome {ECO:0000313|Proteomes:UP000189810};
KW   Sigma factor {ECO:0000256|ARBA:ARBA00023082};
KW   Transcription {ECO:0000256|ARBA:ARBA00023163};
KW   Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW   Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT   DOMAIN          67..176
FT                   /note="RNA polymerase sigma factor 54 core-binding"
FT                   /evidence="ECO:0000259|Pfam:PF04963"
FT   DOMAIN          236..373
FT                   /note="RNA polymerase sigma factor 54 DNA-binding"
FT                   /evidence="ECO:0000259|Pfam:PF04552"
SQ   SEQUENCE   375 AA;  43625 MW;  F83BE846FD5684B2 CRC64;
     MQSPQVKPEL HTKLQLNLTL GVDIKLLQET SEDLSKVLEE ESRKNPCVVR YTRRIPKFFY
     EEIPRQEVAA RESHMESLIK QAKLEFDGQD LDVALEIIYS LDAKGFLGES VEDIAKRFGT
     EPQYVESIRR FITREFEPLG VASKDIKEFL VLQVEELYPS QRHLIPKLLK ALESRRPVRD
     QEVLSLLSTL KLFPLSTDAA YTHTSVDVVA EYENGEWYLF VYEDFVDFDV EKRDGDWERA
     KRLKMLLEMR RKILRDVSYR IIHRQEGFLL RGEPLKALKV SSVAKDIGID TSTLSRIISR
     KSIKTPAGTY PLRFFFVRES KSGLSTQEVM LLVRKILEEK GMHLSDREVS LEVKKLGFNL
     ARRTVAKYRR LLGLR
//