ID A0A1N6SX74_9FLAO Unreviewed; 522 AA.
AC A0A1N6SX74;
DT 15-MAR-2017, integrated into UniProtKB/TrEMBL.
DT 15-MAR-2017, sequence version 1.
DT 24-JAN-2024, entry version 28.
DE RecName: Full=Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335};
DE Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};
DE EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};
GN Name=rny {ECO:0000256|HAMAP-Rule:MF_00335};
GN ORFNames=SAMN05880574_11361 {ECO:0000313|EMBL:SIQ45733.1};
OS Chryseobacterium sp. RU37D.
OC Bacteria; Bacteroidota; Flavobacteriia; Flavobacteriales; Weeksellaceae;
OC Chryseobacterium group; Chryseobacterium.
OX NCBI_TaxID=1907397 {ECO:0000313|EMBL:SIQ45733.1, ECO:0000313|Proteomes:UP000185978};
RN [1] {ECO:0000313|Proteomes:UP000185978}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=RU37D {ECO:0000313|Proteomes:UP000185978};
RA Varghese N., Submissions S.;
RL Submitted (JAN-2017) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Endoribonuclease that initiates mRNA decay.
CC {ECO:0000256|HAMAP-Rule:MF_00335}.
CC -!- SIMILARITY: Belongs to the RNase Y family. {ECO:0000256|HAMAP-
CC Rule:MF_00335}.
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DR EMBL; FTMM01000013; SIQ45733.1; -; Genomic_DNA.
DR RefSeq; WP_076446085.1; NZ_FTMM01000013.1.
DR AlphaFoldDB; A0A1N6SX74; -.
DR STRING; 1907397.SAMN05880574_11361; -.
DR OrthoDB; 9803205at2; -.
DR Proteomes; UP000185978; Unassembled WGS sequence.
DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-UniRule.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0004521; F:RNA endonuclease activity; IEA:UniProtKB-UniRule.
DR GO; GO:0006402; P:mRNA catabolic process; IEA:UniProtKB-UniRule.
DR CDD; cd00077; HDc; 1.
DR CDD; cd22431; KH-I_RNaseY; 1.
DR Gene3D; 1.10.3210.10; Hypothetical protein af1432; 1.
DR Gene3D; 3.30.1370.10; K Homology domain, type 1; 1.
DR HAMAP; MF_00335; RNase_Y; 1.
DR InterPro; IPR003607; HD/PDEase_dom.
DR InterPro; IPR006674; HD_domain.
DR InterPro; IPR006675; HDIG_dom.
DR InterPro; IPR004087; KH_dom.
DR InterPro; IPR004088; KH_dom_type_1.
DR InterPro; IPR036612; KH_dom_type_1_sf.
DR InterPro; IPR017705; Ribonuclease_Y.
DR InterPro; IPR022711; RNase_Y_N.
DR NCBIfam; TIGR00277; HDIG; 1.
DR NCBIfam; TIGR03319; RNase_Y; 1.
DR PANTHER; PTHR12826; RIBONUCLEASE Y; 1.
DR PANTHER; PTHR12826:SF15; RIBONUCLEASE Y; 1.
DR Pfam; PF01966; HD; 1.
DR Pfam; PF00013; KH_1; 1.
DR Pfam; PF12072; RNase_Y_N; 1.
DR SMART; SM00471; HDc; 1.
DR SMART; SM00322; KH; 1.
DR SUPFAM; SSF54791; Eukaryotic type KH-domain (KH-domain type I); 1.
DR SUPFAM; SSF109604; HD-domain/PDEase-like; 1.
DR PROSITE; PS51831; HD; 1.
DR PROSITE; PS50084; KH_TYPE_1; 1.
PE 3: Inferred from homology;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Endonuclease {ECO:0000256|ARBA:ARBA00022759, ECO:0000256|HAMAP-
KW Rule:MF_00335};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801, ECO:0000256|HAMAP-Rule:MF_00335};
KW Nuclease {ECO:0000256|ARBA:ARBA00022722, ECO:0000256|HAMAP-Rule:MF_00335};
KW Reference proteome {ECO:0000313|Proteomes:UP000185978};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884, ECO:0000256|HAMAP-
KW Rule:MF_00335}.
FT DOMAIN 338..431
FT /note="HD"
FT /evidence="ECO:0000259|PROSITE:PS51831"
FT COILED 39..148
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 522 AA; 58159 MW; C06064506AFA2884 CRC64;
MTTAIIVGVI CLVIGAVIGI FFSRSSLNTK AKFIIDDAKK NAENLIEKAT VQAESIKKEK
NLQAKEKFLE LKSQHDADIQ AREKKMQETE KRIKDKEHKL NDELSKTGKL EKDLDKQIAD
YAKKTEVLER KQQELDVATA KKVEILEKIA SYTAEEAKVE LVETMKAEAK TKAQAHVQSI
MEEAQLNAKS EARKIVIQTI QRIGTEQAIE NSVSVFNIES DEVKGRIIGR EGRNIRALEA
VTGVEIIVDD TPEAILLSCF DPVRREIARL SLHRLVTDGR IHPARIEEVV EKTRKQIEEE
IIEVGKRTII DLGIHGLHPE LIKIVGRMKY RSSYGQNLLQ HSREVANIAA TMAAELGLNV
KLAKRAGLLH DIGKVPEQES ELPHALLGMQ WAEKYGENAE VVNAIGAHHD EVEMTSLLSP
IIQVADAISG ARPGARRQVL ESYIQRLKDL ESAALSFDGV SSAYAIQAGR ELRVMVESGK
VNDEVASQLS YDISEKIQNE LTYPGQVKVT VIRETRAVNI AR
//
