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Database: UniProt
Entry: A0A1N6SYS6_9GAMM
LinkDB: A0A1N6SYS6_9GAMM
Original site: A0A1N6SYS6_9GAMM 
ID   A0A1N6SYS6_9GAMM        Unreviewed;       319 AA.
AC   A0A1N6SYS6;
DT   15-MAR-2017, integrated into UniProtKB/TrEMBL.
DT   15-MAR-2017, sequence version 1.
DT   24-JAN-2024, entry version 22.
DE   SubName: Full=L,D-transpeptidase YbiS {ECO:0000313|EMBL:SIQ46251.1};
GN   ORFNames=SAMN05880558_103335 {ECO:0000313|EMBL:SIQ46251.1};
OS   Aeromonas sp. RU39B.
OC   Bacteria; Pseudomonadota; Gammaproteobacteria; Aeromonadales;
OC   Aeromonadaceae; Aeromonas.
OX   NCBI_TaxID=1907416 {ECO:0000313|EMBL:SIQ46251.1, ECO:0000313|Proteomes:UP000186911};
RN   [1] {ECO:0000313|EMBL:SIQ46251.1, ECO:0000313|Proteomes:UP000186911}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=RU39B {ECO:0000313|EMBL:SIQ46251.1,
RC   ECO:0000313|Proteomes:UP000186911};
RA   Mah S.A., Swanson W.J., Moy G.W., Vacquier V.D.;
RL   Submitted (JAN-2017) to the EMBL/GenBank/DDBJ databases.
CC   -!- PATHWAY: Cell wall biogenesis; peptidoglycan biosynthesis.
CC       {ECO:0000256|ARBA:ARBA00004752}.
CC   -!- SUBCELLULAR LOCATION: Periplasm {ECO:0000256|ARBA:ARBA00004418}.
CC   -!- SIMILARITY: Belongs to the YkuD family.
CC       {ECO:0000256|ARBA:ARBA00005992}.
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DR   EMBL; FTMJ01000003; SIQ46251.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A1N6SYS6; -.
DR   STRING; 1907416.SAMN05880558_103335; -.
DR   InParanoid; A0A1N6SYS6; -.
DR   UniPathway; UPA00219; -.
DR   Proteomes; UP000186911; Unassembled WGS sequence.
DR   GO; GO:0042597; C:periplasmic space; IEA:UniProtKB-SubCell.
DR   GO; GO:0004180; F:carboxypeptidase activity; IEA:UniProt.
DR   GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW.
DR   GO; GO:0009252; P:peptidoglycan biosynthetic process; IEA:UniProtKB-UniPathway.
DR   CDD; cd00118; LysM; 1.
DR   CDD; cd16913; YkuD_like; 1.
DR   Gene3D; 2.40.440.10; L,D-transpeptidase catalytic domain-like; 1.
DR   Gene3D; 3.10.350.10; LysM domain; 1.
DR   InterPro; IPR005490; LD_TPept_cat_dom.
DR   InterPro; IPR041597; Ldt_C.
DR   InterPro; IPR018392; LysM_dom.
DR   InterPro; IPR036779; LysM_dom_sf.
DR   InterPro; IPR038063; Transpep_catalytic_dom.
DR   PANTHER; PTHR30582; L,D-TRANSPEPTIDASE; 1.
DR   PANTHER; PTHR30582:SF32; L,D-TRANSPEPTIDASE ERFK/SRFK-RELATED; 1.
DR   Pfam; PF17969; Ldt_C; 1.
DR   Pfam; PF01476; LysM; 1.
DR   Pfam; PF03734; YkuD; 1.
DR   SMART; SM00257; LysM; 1.
DR   SUPFAM; SSF141523; L,D-transpeptidase catalytic domain-like; 1.
DR   PROSITE; PS51782; LYSM; 1.
PE   3: Inferred from homology;
KW   Periplasm {ECO:0000256|ARBA:ARBA00022764};
KW   Signal {ECO:0000256|ARBA:ARBA00022729, ECO:0000256|SAM:SignalP};
KW   Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT   SIGNAL          1..23
FT                   /evidence="ECO:0000256|SAM:SignalP"
FT   CHAIN           24..319
FT                   /evidence="ECO:0000256|SAM:SignalP"
FT                   /id="PRO_5013383207"
FT   DOMAIN          40..85
FT                   /note="LysM"
FT                   /evidence="ECO:0000259|PROSITE:PS51782"
SQ   SEQUENCE   319 AA;  35342 MW;  781B43753A5DF11B CRC64;
     MMKSWQSLAL LTGLLCKVLP AAAIEYALPT EGSRLIGKNI EYVVPNDGHS LEQIAAQFQL
     GLTNLLEANP GVDPYLPRPG SKLVIPHQLL LPDTVHEGII INLAEMRLYY YPKGEKKVHV
     LPIGIGQLGA GTPENWVTKV ERKRANPTWT PTENIRRRYA ARGETLPAVW PAGPDNPMGL
     FALYIGNLYA IHGTNANFGI GLRVSSGCVR LRNDDIEFLF KKVPVGTRVQ FINQPVKKSL
     EPDGSRYLEV HQPLSRSEEE YKSNGIVPLP MTPALTRFIA SKETNSKVVK QALEQRTGIP
     MRINNKAATG EPVNHDELF
//
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