ID A0A1N7D3J0_9SPHI Unreviewed; 491 AA.
AC A0A1N7D3J0;
DT 15-MAR-2017, integrated into UniProtKB/TrEMBL.
DT 15-MAR-2017, sequence version 1.
DT 24-JAN-2024, entry version 29.
DE SubName: Full=RNA polymerase sigma-54 factor {ECO:0000313|EMBL:MBB6128718.1};
GN ORFNames=HDF22_002841 {ECO:0000313|EMBL:MBB6128718.1};
OS Mucilaginibacter lappiensis.
OC Bacteria; Bacteroidota; Sphingobacteriia; Sphingobacteriales;
OC Sphingobacteriaceae; Mucilaginibacter.
OX NCBI_TaxID=354630 {ECO:0000313|EMBL:MBB6128718.1, ECO:0000313|Proteomes:UP000548326};
RN [1] {ECO:0000313|EMBL:MBB6128718.1, ECO:0000313|Proteomes:UP000548326}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=MP601 {ECO:0000313|EMBL:MBB6128718.1,
RC ECO:0000313|Proteomes:UP000548326};
RA Whitman W.;
RT "Genomic Encyclopedia of Type Strains, Phase IV (KMG-V): Genome sequencing
RT to study the core and pangenomes of soil and plant-associated
RT prokaryotes.";
RL Submitted (AUG-2020) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the sigma-54 factor family.
CC {ECO:0000256|ARBA:ARBA00008798}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:MBB6128718.1}.
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DR EMBL; JACHCA010000007; MBB6128718.1; -; Genomic_DNA.
DR RefSeq; WP_076375284.1; NZ_JACHCB010000010.1.
DR AlphaFoldDB; A0A1N7D3J0; -.
DR STRING; 354630.SAMN05421821_110175; -.
DR OrthoDB; 9814402at2; -.
DR Proteomes; UP000548326; Unassembled WGS sequence.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0001216; F:DNA-binding transcription activator activity; IEA:InterPro.
DR GO; GO:0016779; F:nucleotidyltransferase activity; IEA:UniProtKB-KW.
DR GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 1.10.10.1330; RNA polymerase sigma-54 factor, core-binding domain; 1.
DR InterPro; IPR000394; RNA_pol_sigma_54.
DR InterPro; IPR007046; RNA_pol_sigma_54_core-bd.
DR InterPro; IPR007634; RNA_pol_sigma_54_DNA-bd.
DR InterPro; IPR038709; RpoN_core-bd_sf.
DR NCBIfam; TIGR02395; rpoN_sigma; 1.
DR PANTHER; PTHR32248; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR PANTHER; PTHR32248:SF4; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR Pfam; PF00309; Sigma54_AID; 1.
DR Pfam; PF04963; Sigma54_CBD; 1.
DR Pfam; PF04552; Sigma54_DBD; 1.
DR PIRSF; PIRSF000774; RpoN; 1.
DR PRINTS; PR00045; SIGMA54FCT.
DR PROSITE; PS00718; SIGMA54_2; 1.
DR PROSITE; PS50044; SIGMA54_3; 1.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478};
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW Sigma factor {ECO:0000256|ARBA:ARBA00023082};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT DOMAIN 118..309
FT /note="RNA polymerase sigma factor 54 core-binding"
FT /evidence="ECO:0000259|Pfam:PF04963"
FT DOMAIN 331..489
FT /note="RNA polymerase sigma factor 54 DNA-binding"
FT /evidence="ECO:0000259|Pfam:PF04552"
SQ SEQUENCE 491 AA; 56854 MW; FC55372478A47C04 CRC64;
MLKQNLQQKL LQKLSPQQIQ FIKLLQVPTV SLDTRIKEEL EENPALEDLS LTNLNEPEEQ
YPDRDPDEDT YNGDEEKGEM DEFNIDDYLQ DDSVNDYGSR YDQNGDDEDE RKEIPIAVQN
SFFESLQLQL DLLPLSDKDF KIGQQIIGSL DDDGYLRRPI MSLTDDLAFS QNVMAEDEEV
EDVLKVIQRF DPAGVGARSL QECLLIQLRK KDPNDPIIGK AIIVVEQYLD EFTRKHYDKL
EKSLNMNSDE LRGVVNEILK LNPKPGDSNE INTKQMQVIP DFHITNNDGT LILTLNSKNA
PELRVSRSYQ EMFQHYDKAA QKDKKLKEAV QFVKQKLDSA KWFIDAIKQR QQTLLKTMNA
IMQYQYEFFL TGDDKNLKPM ILKDIADRIN MDISTVSRVA NSKYVQTEFG TFLLKSFFSE
AIQTESGEEV SNKEVKKILE EHIGQEDKRH PLADEKLTDI LKDAGYNIAR RTVAKYREQM
NIPVARLRRE L
//
