ID A0A1Q2MIE8_9BACT Unreviewed; 494 AA.
AC A0A1Q2MIE8;
DT 12-APR-2017, integrated into UniProtKB/TrEMBL.
DT 12-APR-2017, sequence version 1.
DT 24-JAN-2024, entry version 28.
DE SubName: Full=RNA polymerase sigma-54 factor 1 {ECO:0000313|EMBL:AQQ72461.1};
GN Name=rpoN1 {ECO:0000313|EMBL:AQQ72461.1};
GN ORFNames=SMSP2_02846 {ECO:0000313|EMBL:AQQ72461.1};
OS Limihaloglobus sulfuriphilus.
OC Bacteria; Planctomycetota; Phycisphaerae; Sedimentisphaerales;
OC Sedimentisphaeraceae; Limihaloglobus.
OX NCBI_TaxID=1851148 {ECO:0000313|EMBL:AQQ72461.1, ECO:0000313|Proteomes:UP000188181};
RN [1] {ECO:0000313|Proteomes:UP000188181}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=SM-Chi-D1 {ECO:0000313|Proteomes:UP000188181};
RA Spring S., Bunk B., Sproer C.;
RT "Comparative genomics and description of representatives of a novel lineage
RT of planctomycetes thriving in anoxic sediments.";
RL Submitted (FEB-2017) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the sigma-54 factor family.
CC {ECO:0000256|ARBA:ARBA00008798}.
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DR EMBL; CP019646; AQQ72461.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A1Q2MIE8; -.
DR STRING; 1851148.SMSP2_02846; -.
DR KEGG; pbas:SMSP2_02846; -.
DR OrthoDB; 9814402at2; -.
DR Proteomes; UP000188181; Chromosome.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0001216; F:DNA-binding transcription activator activity; IEA:InterPro.
DR GO; GO:0016779; F:nucleotidyltransferase activity; IEA:UniProtKB-KW.
DR GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 1.10.10.1330; RNA polymerase sigma-54 factor, core-binding domain; 1.
DR InterPro; IPR000394; RNA_pol_sigma_54.
DR InterPro; IPR007046; RNA_pol_sigma_54_core-bd.
DR InterPro; IPR007634; RNA_pol_sigma_54_DNA-bd.
DR InterPro; IPR038709; RpoN_core-bd_sf.
DR NCBIfam; TIGR02395; rpoN_sigma; 1.
DR PANTHER; PTHR32248; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR PANTHER; PTHR32248:SF4; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR Pfam; PF00309; Sigma54_AID; 1.
DR Pfam; PF04963; Sigma54_CBD; 1.
DR Pfam; PF04552; Sigma54_DBD; 1.
DR PIRSF; PIRSF000774; RpoN; 1.
DR PRINTS; PR00045; SIGMA54FCT.
DR PROSITE; PS00717; SIGMA54_1; 1.
DR PROSITE; PS50044; SIGMA54_3; 1.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478};
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW Reference proteome {ECO:0000313|Proteomes:UP000188181};
KW Sigma factor {ECO:0000256|ARBA:ARBA00023082};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT DOMAIN 129..320
FT /note="RNA polymerase sigma factor 54 core-binding"
FT /evidence="ECO:0000259|Pfam:PF04963"
FT DOMAIN 335..492
FT /note="RNA polymerase sigma factor 54 DNA-binding"
FT /evidence="ECO:0000259|Pfam:PF04552"
FT REGION 55..74
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 494 AA; 56407 MW; 4CC71407C9D0AFBD CRC64;
MSAMRLELGN QMRMEQKMLL APKMIQSMEI LQLPAMELMQ RIDAELSKNP VLEAEYADPD
APEADNSDQV PDKNYDERDL VVDNTDGVDD FNRLDSLDEG FKDAVNQTGP IRETRNVNQD
EDPKYEALQN TADTHISLYE YLVRQWSVTT EDEKLLEAGF AILEQIDNKG YFTGSLDELR
GYENEPLERK TCEKALEMIQ QLEPAGVGAR DIPECLKIQI DNQEEPRRFE TARRILTECY
ELLLANRRAD IAKKLGKAPE EIADAIKQLG RFNIAPGDKF SQGPNLAIRP DIIVEKNEDG
VYEPRLADTS LPDLYINSYY SRMASDKTVD GKTKNYLKRN INSANWLIEA IMQRKQTLMK
VATAVVNRQQ EFFEKGIMHL KPLTMVSIAE EIEMHVSTVS RAVAEKYVQC NRGVIPLHDF
FSTAQKQADG SSQSTDSIKA VIKEIIDNED KSKPLGDEKI MKKLEQKGIK IARRTIVKYR
QQMNIPTAKM RKLY
//
