ID A0A1Q3CGP2_CEPFO Unreviewed; 1513 AA.
AC A0A1Q3CGP2;
DT 12-APR-2017, integrated into UniProtKB/TrEMBL.
DT 12-APR-2017, sequence version 1.
DT 27-MAR-2024, entry version 24.
DE RecName: Full=DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00012418};
DE EC=2.7.7.6 {ECO:0000256|ARBA:ARBA00012418};
DE Flags: Fragment;
GN ORFNames=CFOL_v3_22891 {ECO:0000313|EMBL:GAV79426.1};
OS Cephalotus follicularis (Albany pitcher plant).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Oxalidales; Cephalotaceae; Cephalotus.
OX NCBI_TaxID=3775 {ECO:0000313|EMBL:GAV79426.1, ECO:0000313|Proteomes:UP000187406};
RN [1] {ECO:0000313|Proteomes:UP000187406}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. St1 {ECO:0000313|Proteomes:UP000187406};
RA Fukushima K., Hasebe M., Fang X.;
RT "Cephalotus genome sequencing.";
RL Submitted (APR-2016) to the EMBL/GenBank/DDBJ databases.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:GAV79426.1}.
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DR EMBL; BDDD01001974; GAV79426.1; -; Genomic_DNA.
DR STRING; 3775.A0A1Q3CGP2; -.
DR InParanoid; A0A1Q3CGP2; -.
DR OrthoDB; 451894at2759; -.
DR Proteomes; UP000187406; Unassembled WGS sequence.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-EC.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0006351; P:DNA-templated transcription; IEA:InterPro.
DR CDD; cd10506; RNAP_IV_RPD1_N; 1.
DR Gene3D; 1.10.132.30; -; 1.
DR Gene3D; 2.40.40.20; -; 1.
DR Gene3D; 3.10.450.40; -; 1.
DR Gene3D; 6.20.50.80; -; 1.
DR Gene3D; 3.30.1490.180; RNA polymerase ii; 1.
DR Gene3D; 4.10.860.120; RNA polymerase II, clamp domain; 1.
DR Gene3D; 1.10.274.100; RNA polymerase Rpb1, domain 3; 1.
DR InterPro; IPR045867; DNA-dir_RpoC_beta_prime.
DR InterPro; IPR040403; NRPD1_N.
DR InterPro; IPR000722; RNA_pol_asu.
DR InterPro; IPR006592; RNA_pol_N.
DR InterPro; IPR007066; RNA_pol_Rpb1_3.
DR InterPro; IPR042102; RNA_pol_Rpb1_3_sf.
DR InterPro; IPR007083; RNA_pol_Rpb1_4.
DR InterPro; IPR044893; RNA_pol_Rpb1_clamp_domain.
DR InterPro; IPR038120; Rpb1_funnel_sf.
DR PANTHER; PTHR19376; DNA-DIRECTED RNA POLYMERASE; 1.
DR PANTHER; PTHR19376:SF36; DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1; 1.
DR Pfam; PF11523; DUF3223; 1.
DR Pfam; PF00623; RNA_pol_Rpb1_2; 1.
DR Pfam; PF04983; RNA_pol_Rpb1_3; 1.
DR Pfam; PF05000; RNA_pol_Rpb1_4; 1.
DR SMART; SM00663; RPOLA_N; 1.
DR SUPFAM; SSF64484; beta and beta-prime subunits of DNA dependent RNA-polymerase; 1.
PE 4: Predicted;
KW DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478};
KW Magnesium {ECO:0000256|ARBA:ARBA00022842};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW Reference proteome {ECO:0000313|Proteomes:UP000187406};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transferase {ECO:0000256|ARBA:ARBA00022679};
KW Zinc {ECO:0000256|ARBA:ARBA00022833}.
FT DOMAIN 275..562
FT /note="RNA polymerase N-terminal"
FT /evidence="ECO:0000259|SMART:SM00663"
FT NON_TER 1
FT /evidence="ECO:0000313|EMBL:GAV79426.1"
SQ SEQUENCE 1513 AA; 170171 MW; 9078BCBEBDA518AB CRC64;
AFVASSFVSF CLCKTTNRRR FSQRTSLVLK KVQYLSSRYS CLISDPAYKS LGPMDNDLSE
EPLVPSALLE SIKFGVATES DKVKTSVLEI DALSQVTDSK LGLPNPTSQC STCGAKNLKS
CEGHFGVINF PFTIINPYYL SEVAQILNKI CPGCKSIRKD LHVKAADLMS REHQYRGCNY
CLGRSADWYP SMKFKVSSND VFKKTAIVVE IIEKRKNKKG ILLPPSDFWD FIPKDPQHEE
NVTKPNRRIL SHAQVHHLLD GIDPKFIKKY VSRIDLLFIN CFPVTPNNHR VTEITHAFSN
GQRLIFDTRT RAYKKLVDFR GSANELSSRV LDCLKISKVY SDKSTSEDPY EALRKNKDTS
FTMSGLRYMK DVVLGKRNDH CFRMVVIGDP NLKLSEIGIP CHIAESLQIS EFLNRFNLEI
LKTCCGLRLL EKGEIYVRRK GCLVRVRRVK DLQLGDIIYR PLSDGDTVLI NRPPSIHQHS
LIALSVKILP TTSVLSINPL CCPPFHGDFD GDCLHGYVSQ SVESRTELNE LVALNKQLIN
GQSGRNLLSL TQDSLTALHL VMEDGVLFNL SEMQQLEMFC PHRLSPPAIV KAPSIGNYIW
TGKQLFSMLL PPGLEYDFPK NNVYISDGEL ITSSEGSAWL HDADGNLFQS IIKHCQGKTL
DFLYSAQEVL CEWLSMRGFS VSLSDLYLSS DSQSRGNMMD EIYCGLQEAE QTCDYNQLMV
ESCQDLLAGS GEEDQDAIDF DVERLCYEKQ RSAALSQASV DAFKQVFRDV QHLVYRYISK
DNSLLAMYKA GSKGNLLKLV QHSMCLGLQH SLVPLSFSFP HQLSCAAWNN HKLPSDHTTE
CPKSFIPSAV VENSFLTGLN PLETFVHSVT SRDSSFSDNA DLPGTLSRRL MFFMRDLYTA
YDGTVRNAYG NQIVQFSYNT DKDTSRTVGT HNSLGESTND CDGIGSHPVG ALSACAISEA
AYSALDQPIS LLETSPLLNL KKVLECGSKK STGNQTVSLF LSEKLRRQRH GFEYGALEVK
NHLERLLFAE AVSTVLIMYS PQTSSQKHLN PWVCHFHICK EIAKRRGLKV HSIIDSLYMR
CKRDLNFSLL DLYIRSTDCS ADDKTEEDDT FCITVTIIEN LKNPLQLDFI RDKIIPFLLG
TVIKGFWEIK KVDIIWNDRP KVSKSQVGSF GELYLRVSTS GDYGGTKFWS RLMNDCLRII
DMIDWTRSHP DNIRSFCLAY GIDAGWKFFL SNLESAISDV GKTILPEHLL LVANCLSATG
DFVSLNSKGL AQQREHASVP SPFMQACFTN PSACFTKAAK AGVVDDLRGS IDALGWGKTP
SVGTGGHFEI IFSGEEDHKL TKPVDVYELL GSQISSEQNL EIESPNTWNH VPEKYGAPWS
RKYNGPASRG LTKWETVIKS FITEKDIRNL SHALKNILHK YPIDHQLNEW DKTILMRALH
FHPRSEEKIG SGAHEIKVAF HPAHQNTRCF HLVRTDGTIE DFSYHKCVLG ALRIIAPQKA
KMYKSKWLKG DTM
//
