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Database: UniProt
Entry: A0A1Q3EFD1_LENED
LinkDB: A0A1Q3EFD1_LENED
Original site: A0A1Q3EFD1_LENED 
ID   A0A1Q3EFD1_LENED        Unreviewed;       893 AA.
AC   A0A1Q3EFD1;
DT   12-APR-2017, integrated into UniProtKB/TrEMBL.
DT   12-APR-2017, sequence version 1.
DT   24-JAN-2024, entry version 25.
DE   SubName: Full=Reverse transcriptase-RNase H-integrase {ECO:0000313|EMBL:GAW05905.1};
GN   ORFNames=LENED_007793 {ECO:0000313|EMBL:GAW05905.1};
OS   Lentinula edodes (Shiitake mushroom) (Lentinus edodes).
OC   Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes;
OC   Agaricomycetidae; Agaricales; Marasmiineae; Omphalotaceae; Lentinula.
OX   NCBI_TaxID=5353 {ECO:0000313|EMBL:GAW05905.1, ECO:0000313|Proteomes:UP000188533};
RN   [1] {ECO:0000313|EMBL:GAW05905.1, ECO:0000313|Proteomes:UP000188533}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=NBRC 111202 {ECO:0000313|EMBL:GAW05905.1,
RC   ECO:0000313|Proteomes:UP000188533};
RG   Lentinula edodes genome sequencing consortium;
RA   Sakamoto Y., Nakade K., Sato S., Yoshida Y., Miyazaki K., Natsume S.,
RA   Konno N.;
RL   Submitted (AUG-2016) to the EMBL/GenBank/DDBJ databases.
RN   [2] {ECO:0000313|EMBL:GAW05905.1, ECO:0000313|Proteomes:UP000188533}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=NBRC 111202 {ECO:0000313|EMBL:GAW05905.1,
RC   ECO:0000313|Proteomes:UP000188533};
RA   Sakamoto Y., Nakade K., Sato S., Yoshida Y., Miyazaki K., Natsume S.,
RA   Konno N.;
RT   "A genome survey and senescence transcriptome analysis in Lentinula
RT   edodes.";
RL   Submitted (FEB-2017) to the EMBL/GenBank/DDBJ databases.
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:GAW05905.1}.
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DR   EMBL; BDGU01000285; GAW05905.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A1Q3EFD1; -.
DR   STRING; 5353.A0A1Q3EFD1; -.
DR   Proteomes; UP000188533; Unassembled WGS sequence.
DR   GO; GO:0005634; C:nucleus; IEA:UniProt.
DR   GO; GO:1901363; F:heterocyclic compound binding; IEA:UniProt.
DR   GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0003964; F:RNA-directed DNA polymerase activity; IEA:UniProtKB-KW.
DR   GO; GO:0015074; P:DNA integration; IEA:InterPro.
DR   CDD; cd09274; RNase_HI_RT_Ty3; 1.
DR   CDD; cd01647; RT_LTR; 1.
DR   Gene3D; 1.10.340.70; -; 1.
DR   Gene3D; 2.40.50.40; -; 1.
DR   Gene3D; 3.30.70.270; -; 2.
DR   Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR   InterPro; IPR016197; Chromo-like_dom_sf.
DR   InterPro; IPR000953; Chromo/chromo_shadow_dom.
DR   InterPro; IPR023780; Chromo_domain.
DR   InterPro; IPR023779; Chromodomain_CS.
DR   InterPro; IPR043502; DNA/RNA_pol_sf.
DR   InterPro; IPR001584; Integrase_cat-core.
DR   InterPro; IPR041588; Integrase_H2C2.
DR   InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR   InterPro; IPR012337; RNaseH-like_sf.
DR   InterPro; IPR036397; RNaseH_sf.
DR   InterPro; IPR000477; RT_dom.
DR   InterPro; IPR041373; RT_RNaseH.
DR   PANTHER; PTHR33064; POL PROTEIN; 1.
DR   PANTHER; PTHR33064:SF35; RIBONUCLEASE H; 1.
DR   Pfam; PF00385; Chromo; 1.
DR   Pfam; PF17921; Integrase_H2C2; 1.
DR   Pfam; PF17917; RT_RNaseH; 1.
DR   Pfam; PF00078; RVT_1; 1.
DR   SMART; SM00298; CHROMO; 1.
DR   SUPFAM; SSF54160; Chromo domain-like; 1.
DR   SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR   SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR   PROSITE; PS00598; CHROMO_1; 1.
DR   PROSITE; PS50013; CHROMO_2; 1.
DR   PROSITE; PS50994; INTEGRASE; 1.
DR   PROSITE; PS50878; RT_POL; 1.
PE   4: Predicted;
KW   Endonuclease {ECO:0000256|ARBA:ARBA00022759};
KW   Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW   Nuclease {ECO:0000256|ARBA:ARBA00022722};
KW   Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW   Reference proteome {ECO:0000313|Proteomes:UP000188533};
KW   RNA-binding {ECO:0000256|ARBA:ARBA00022884};
KW   RNA-directed DNA polymerase {ECO:0000256|ARBA:ARBA00022918,
KW   ECO:0000313|EMBL:GAW05905.1}; Transferase {ECO:0000256|ARBA:ARBA00022679};
KW   Transposable element {ECO:0000256|ARBA:ARBA00022464}.
FT   DOMAIN          1..104
FT                   /note="Reverse transcriptase"
FT                   /evidence="ECO:0000259|PROSITE:PS50878"
FT   DOMAIN          522..693
FT                   /note="Integrase catalytic"
FT                   /evidence="ECO:0000259|PROSITE:PS50994"
FT   DOMAIN          843..886
FT                   /note="Chromo"
FT                   /evidence="ECO:0000259|PROSITE:PS50013"
SQ   SEQUENCE   893 AA;  101925 MW;  97C3683639DE95DA CRC64;
     MDEDSIKLTA ITTPFGLYEW TVMPQGLKNS PAIHQRRVTS ALRHLIGKIC YVYVDDIIIW
     SKSLEEHIAN VERVLLALRM ARLYCNPKKC ELFSFNVHFL GHSISAEGIA ADDKKVERIL
     DWPTPKTVKE LQAFLGLVRY VAAFLPRLAE LTDILTGLTS NCVDKNRLAW EPRHQSAFDD
     IKSLVTSREC LTVIDHDQLD THKIFVTTDA SDRCSGAVLS FGTSWETARP VSFDSSTFKN
     AELNYPVHEK ELLAIIRALK KWRVDLLGVP FVIMTDHRTL ENFHSQPDLS RRQARWMEFF
     SQFDCKIVYV AGDKNSVADA LSRRSDLCLP SEEPTSGFHV HSSAEAIPTS RHPYAYCPDS
     DDDPDLPILC ILPDSSWFSA RALAHFLPAD TPPPPIGAVL EITSDASLLD DIRTGYTTDK
     WCKDLPSMAS SMPLIRRDPI SKLWYIGDRL IVPRVANIRE ELFRLAHDNL GHFGFDKSYA
     ALREAYYWPH MRRDLEKAYV PACDECQRNK SSTQKKAGPL HPLPVPDRRF SSVAMDFIGP
     LPEDNGSNCI LTITDRLGAD IRIVPCRTDL TASECAQLFF DSWYCENGLP DDIVCDRDHL
     FVSKFWEALR SLSGVRLRMS TSYHPETDGS SERSNKTVVQ MLRYHVERNQ KGWKRALPRI
     RFEIMNTVNS SIGMSGFQLR SGFSPRLIPP LVPDLPPRSS EHEFDAHAFL TNIQVDVLEA
     QDCLLSAKLD QARAHNRHRR ADPVFQLHDR VLLKTKHRKN EYKRKGEKRA AKFFPRYDGP
     YTITDVHPQF SAYTLDLPAS LNIFPTFHAD ELKLYTDNDP NLFPNREFPR PGPIVTADGL
     LELEVDRILD ERKVGRGRRY LVRWRGYGPE FDSWEPGRSL QQCEALDVWE GLA
//
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