ID A0A1Q3EFD1_LENED Unreviewed; 893 AA.
AC A0A1Q3EFD1;
DT 12-APR-2017, integrated into UniProtKB/TrEMBL.
DT 12-APR-2017, sequence version 1.
DT 24-JAN-2024, entry version 25.
DE SubName: Full=Reverse transcriptase-RNase H-integrase {ECO:0000313|EMBL:GAW05905.1};
GN ORFNames=LENED_007793 {ECO:0000313|EMBL:GAW05905.1};
OS Lentinula edodes (Shiitake mushroom) (Lentinus edodes).
OC Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes;
OC Agaricomycetidae; Agaricales; Marasmiineae; Omphalotaceae; Lentinula.
OX NCBI_TaxID=5353 {ECO:0000313|EMBL:GAW05905.1, ECO:0000313|Proteomes:UP000188533};
RN [1] {ECO:0000313|EMBL:GAW05905.1, ECO:0000313|Proteomes:UP000188533}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=NBRC 111202 {ECO:0000313|EMBL:GAW05905.1,
RC ECO:0000313|Proteomes:UP000188533};
RG Lentinula edodes genome sequencing consortium;
RA Sakamoto Y., Nakade K., Sato S., Yoshida Y., Miyazaki K., Natsume S.,
RA Konno N.;
RL Submitted (AUG-2016) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EMBL:GAW05905.1, ECO:0000313|Proteomes:UP000188533}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=NBRC 111202 {ECO:0000313|EMBL:GAW05905.1,
RC ECO:0000313|Proteomes:UP000188533};
RA Sakamoto Y., Nakade K., Sato S., Yoshida Y., Miyazaki K., Natsume S.,
RA Konno N.;
RT "A genome survey and senescence transcriptome analysis in Lentinula
RT edodes.";
RL Submitted (FEB-2017) to the EMBL/GenBank/DDBJ databases.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:GAW05905.1}.
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DR EMBL; BDGU01000285; GAW05905.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A1Q3EFD1; -.
DR STRING; 5353.A0A1Q3EFD1; -.
DR Proteomes; UP000188533; Unassembled WGS sequence.
DR GO; GO:0005634; C:nucleus; IEA:UniProt.
DR GO; GO:1901363; F:heterocyclic compound binding; IEA:UniProt.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003964; F:RNA-directed DNA polymerase activity; IEA:UniProtKB-KW.
DR GO; GO:0015074; P:DNA integration; IEA:InterPro.
DR CDD; cd09274; RNase_HI_RT_Ty3; 1.
DR CDD; cd01647; RT_LTR; 1.
DR Gene3D; 1.10.340.70; -; 1.
DR Gene3D; 2.40.50.40; -; 1.
DR Gene3D; 3.30.70.270; -; 2.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR InterPro; IPR016197; Chromo-like_dom_sf.
DR InterPro; IPR000953; Chromo/chromo_shadow_dom.
DR InterPro; IPR023780; Chromo_domain.
DR InterPro; IPR023779; Chromodomain_CS.
DR InterPro; IPR043502; DNA/RNA_pol_sf.
DR InterPro; IPR001584; Integrase_cat-core.
DR InterPro; IPR041588; Integrase_H2C2.
DR InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR036397; RNaseH_sf.
DR InterPro; IPR000477; RT_dom.
DR InterPro; IPR041373; RT_RNaseH.
DR PANTHER; PTHR33064; POL PROTEIN; 1.
DR PANTHER; PTHR33064:SF35; RIBONUCLEASE H; 1.
DR Pfam; PF00385; Chromo; 1.
DR Pfam; PF17921; Integrase_H2C2; 1.
DR Pfam; PF17917; RT_RNaseH; 1.
DR Pfam; PF00078; RVT_1; 1.
DR SMART; SM00298; CHROMO; 1.
DR SUPFAM; SSF54160; Chromo domain-like; 1.
DR SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR PROSITE; PS00598; CHROMO_1; 1.
DR PROSITE; PS50013; CHROMO_2; 1.
DR PROSITE; PS50994; INTEGRASE; 1.
DR PROSITE; PS50878; RT_POL; 1.
PE 4: Predicted;
KW Endonuclease {ECO:0000256|ARBA:ARBA00022759};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Nuclease {ECO:0000256|ARBA:ARBA00022722};
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW Reference proteome {ECO:0000313|Proteomes:UP000188533};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884};
KW RNA-directed DNA polymerase {ECO:0000256|ARBA:ARBA00022918,
KW ECO:0000313|EMBL:GAW05905.1}; Transferase {ECO:0000256|ARBA:ARBA00022679};
KW Transposable element {ECO:0000256|ARBA:ARBA00022464}.
FT DOMAIN 1..104
FT /note="Reverse transcriptase"
FT /evidence="ECO:0000259|PROSITE:PS50878"
FT DOMAIN 522..693
FT /note="Integrase catalytic"
FT /evidence="ECO:0000259|PROSITE:PS50994"
FT DOMAIN 843..886
FT /note="Chromo"
FT /evidence="ECO:0000259|PROSITE:PS50013"
SQ SEQUENCE 893 AA; 101925 MW; 97C3683639DE95DA CRC64;
MDEDSIKLTA ITTPFGLYEW TVMPQGLKNS PAIHQRRVTS ALRHLIGKIC YVYVDDIIIW
SKSLEEHIAN VERVLLALRM ARLYCNPKKC ELFSFNVHFL GHSISAEGIA ADDKKVERIL
DWPTPKTVKE LQAFLGLVRY VAAFLPRLAE LTDILTGLTS NCVDKNRLAW EPRHQSAFDD
IKSLVTSREC LTVIDHDQLD THKIFVTTDA SDRCSGAVLS FGTSWETARP VSFDSSTFKN
AELNYPVHEK ELLAIIRALK KWRVDLLGVP FVIMTDHRTL ENFHSQPDLS RRQARWMEFF
SQFDCKIVYV AGDKNSVADA LSRRSDLCLP SEEPTSGFHV HSSAEAIPTS RHPYAYCPDS
DDDPDLPILC ILPDSSWFSA RALAHFLPAD TPPPPIGAVL EITSDASLLD DIRTGYTTDK
WCKDLPSMAS SMPLIRRDPI SKLWYIGDRL IVPRVANIRE ELFRLAHDNL GHFGFDKSYA
ALREAYYWPH MRRDLEKAYV PACDECQRNK SSTQKKAGPL HPLPVPDRRF SSVAMDFIGP
LPEDNGSNCI LTITDRLGAD IRIVPCRTDL TASECAQLFF DSWYCENGLP DDIVCDRDHL
FVSKFWEALR SLSGVRLRMS TSYHPETDGS SERSNKTVVQ MLRYHVERNQ KGWKRALPRI
RFEIMNTVNS SIGMSGFQLR SGFSPRLIPP LVPDLPPRSS EHEFDAHAFL TNIQVDVLEA
QDCLLSAKLD QARAHNRHRR ADPVFQLHDR VLLKTKHRKN EYKRKGEKRA AKFFPRYDGP
YTITDVHPQF SAYTLDLPAS LNIFPTFHAD ELKLYTDNDP NLFPNREFPR PGPIVTADGL
LELEVDRILD ERKVGRGRRY LVRWRGYGPE FDSWEPGRSL QQCEALDVWE GLA
//