ID A0A1Q5ZY85_9SPHI Unreviewed; 1543 AA.
AC A0A1Q5ZY85;
DT 12-APR-2017, integrated into UniProtKB/TrEMBL.
DT 12-APR-2017, sequence version 1.
DT 27-MAR-2024, entry version 23.
DE RecName: Full=Sigma-54 factor interaction domain-containing protein {ECO:0000259|PROSITE:PS50045};
GN ORFNames=RG47T_2168 {ECO:0000313|EMBL:OKS86711.1};
OS Mucilaginibacter polytrichastri.
OC Bacteria; Bacteroidota; Sphingobacteriia; Sphingobacteriales;
OC Sphingobacteriaceae; Mucilaginibacter.
OX NCBI_TaxID=1302689 {ECO:0000313|EMBL:OKS86711.1, ECO:0000313|Proteomes:UP000186720};
RN [1] {ECO:0000313|EMBL:OKS86711.1, ECO:0000313|Proteomes:UP000186720}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=RG4-7 {ECO:0000313|EMBL:OKS86711.1,
RC ECO:0000313|Proteomes:UP000186720};
RA Li Y.;
RT "Whole Genome Sequencing of Mucilaginibacter polytrichastri RG4-7(T)
RT isolated from the moss sample.";
RL Submitted (NOV-2016) to the EMBL/GenBank/DDBJ databases.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:OKS86711.1}.
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DR EMBL; MPPL01000001; OKS86711.1; -; Genomic_DNA.
DR STRING; 1302689.RG47T_2168; -.
DR Proteomes; UP000186720; Unassembled WGS sequence.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016887; F:ATP hydrolysis activity; IEA:InterPro.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd00009; AAA; 1.
DR Gene3D; 1.10.8.60; -; 1.
DR Gene3D; 3.30.450.40; -; 5.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR InterPro; IPR003593; AAA+_ATPase.
DR InterPro; IPR003018; GAF.
DR InterPro; IPR029016; GAF-like_dom_sf.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR002078; Sigma_54_int.
DR InterPro; IPR025662; Sigma_54_int_dom_ATP-bd_1.
DR InterPro; IPR025943; Sigma_54_int_dom_ATP-bd_2.
DR InterPro; IPR025944; Sigma_54_int_dom_CS.
DR PANTHER; PTHR32071:SF121; PTS-DEPENDENT DIHYDROXYACETONE KINASE OPERON REGULATORY PROTEIN-RELATED; 1.
DR PANTHER; PTHR32071; TRANSCRIPTIONAL REGULATORY PROTEIN; 1.
DR Pfam; PF01590; GAF; 1.
DR Pfam; PF00158; Sigma54_activat; 1.
DR SMART; SM00382; AAA; 1.
DR SMART; SM00065; GAF; 2.
DR SUPFAM; SSF55781; GAF domain-like; 6.
DR SUPFAM; SSF46689; Homeodomain-like; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR PROSITE; PS00675; SIGMA54_INTERACT_1; 1.
DR PROSITE; PS00676; SIGMA54_INTERACT_2; 1.
DR PROSITE; PS00688; SIGMA54_INTERACT_3; 1.
DR PROSITE; PS50045; SIGMA54_INTERACT_4; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000186720};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 1230..1459
FT /note="Sigma-54 factor interaction"
FT /evidence="ECO:0000259|PROSITE:PS50045"
SQ SEQUENCE 1543 AA; 174499 MW; 0B4D16B0FA6A8F3A CRC64;
MKVGRADFLQ LNFEPINDGQ FLSCFQAHRK HIPSPNLSKY IKEFAEQHVN HHSFQLFDKT
QFIALEASGK PLKGFPYTYI IFIPVHLKQQ RTGVLSLGFI TDSEPDTFAV ELLANELTML
LMKIQLVRTQ LQLEKNNALL LNFSQMLSPV VNRQQLFMVL HNQLKKQLDF TYSTVFMMNE
KGSELKDFLF DPNTATVENP FQNELRIGKF PIDSDISLES YQNNTQLIYD FDELTANHKI
YPFLNSDKTN ADKTGFLINL FKGRDVIGNW IVLFKTSQSQ HTGLLHLLQL LAAQLTGTIL
NIMHLEKIEE REFEYGIIQS INSDLSSNLN KDDILGTIHL KMKHLFDFAH HYVAAINEDG
ATIGTFLKDS ESKSRFHPNY RAITKTKYPL NDPVFYKGML SRDAVIYDMD LMLTRGSLPE
YMAINYECGI RKTVVIGLHV GTRILGVWVI NLTETQEMNA KQLKLVKDIS HQLSIACDNL
IANAAVLKRK AESEFLLKLS ADITTIRTKR DLFSIINKNL KKLFDFEEIV IMALNENSTY
SSFLHSSVLY GAEEFIYPEF PTQQFPCNDG IFNIAADHAS AYVFHLDEII KDPNLPQYLL
KEYEQGIRTK VAVTLRDNSH IKGLLFVNAK EETIYTDHQV DLIYGASLQF ATAFSNILGS
EENQEREGER NLLLSFSNQI AAVRDYDQLL QVITFQLKKV LGFSHIMVGT MSDDDEYFSA
YLLDPDTKNK NHPIHRINTI RRFPVDDGVI NKVFTSGLPV TLDLNTLAEQ QDLPVYLNIN
RESGINQAIA ARFSKGVFAF GFLMIFYEAV TPPDARALSL IAGLAQQIAI TVSNIIANED
IQKKEAAKTK LLKFSGAIAS IRSKEELSDV IDEQLIGLKI CEGYELRLLT AEKKSTYSYL
SNFSSFAEHE LGNPEGQVSS VEEVCPFIDC VLKSGKPAIY NLKEFPVDDT TPQWMNQWNS
IGVKQLIGVP LVTGKNNLGA LLLTVEDAME SKEDHFQLLS SICSQMAIAV SNISANEEIQ
QRAHEKSLLL NFSNAIASVR GKKELSLVIN RYMKDMGLIR EYAVHALSDN KLTHQLFLFD
PEANFTRHSD FGQPDRFYDV EDGFMNTVLA SSSPVLFNVN KANEGAVTPA YVRFWKTFGF
EEALGLPLRF GKENIGMMVI HPASTYNATE EENQLLESIC SQIAISVSNI KANEKVNDQL
KEIASYKQQL EEEKIYLTEE IETTYNYAEI VGESEEVKKT YKLVDQVAAS DSTVLILGET
GTGKELIARA IHSNSPRKGK LMVKVNCAAL PANLIESELF GHERGSFTGA TERRLGKFEL
ANGGTLFLDE IGEMPLDLQV KLLRALQEKE IERVGGKTTI KVDVRIIAAT NRDLEKEMEE
GRFRSDLFYR LNIFPISLPP LRERREDILL LATHFIQRYS KKAGKNISRL STRAMEDLKN
YDWPGNIREL EHLIERSVLL TSGDMIKQVH LPSTRQQILT SAVVQEVSLK TIDENEKDHI
YNILKYCKGK IAGEGGAAEI LGVPPTTLNS KIKRLGIRRE HAK
//
