ID A0A1Q8RI43_9STRE Unreviewed; 455 AA.
AC A0A1Q8RI43;
DT 12-APR-2017, integrated into UniProtKB/TrEMBL.
DT 12-APR-2017, sequence version 1.
DT 27-MAR-2024, entry version 24.
DE SubName: Full=23S rRNA (Uracil-5-)-methyltransferase RumA {ECO:0000313|EMBL:OLN83994.1};
GN ORFNames=BMI76_02005 {ECO:0000313|EMBL:OLN83994.1};
OS Streptococcus sp. 'caviae'.
OC Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
OC Streptococcus.
OX NCBI_TaxID=1915004 {ECO:0000313|EMBL:OLN83994.1, ECO:0000313|Proteomes:UP000186915};
RN [1] {ECO:0000313|EMBL:OLN83994.1, ECO:0000313|Proteomes:UP000186915}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Cavy grass 6 {ECO:0000313|EMBL:OLN83994.1,
RC ECO:0000313|Proteomes:UP000186915};
RA Palakawong Na Ayudthaya S., Marshall I.P., Schreiber L., Plugge C.M.;
RT "Draft Genome Sequence of Streptococcus caviae Strain Cavy grass 6,
RT Isolated from Domesticated Guinea Pig Faecal Samples.";
RL Submitted (NOV-2016) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the class I-like SAM-binding methyltransferase
CC superfamily. RNA M5U methyltransferase family. {ECO:0000256|PROSITE-
CC ProRule:PRU01024}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:OLN83994.1}.
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DR EMBL; MOWR01000002; OLN83994.1; -; Genomic_DNA.
DR RefSeq; WP_075345956.1; NZ_MOWR01000002.1.
DR AlphaFoldDB; A0A1Q8RI43; -.
DR STRING; 1915004.BMI76_02005; -.
DR OrthoDB; 9804590at2; -.
DR Proteomes; UP000186915; Unassembled WGS sequence.
DR GO; GO:0008173; F:RNA methyltransferase activity; IEA:InterPro.
DR GO; GO:0032259; P:methylation; IEA:UniProtKB-KW.
DR GO; GO:0034470; P:ncRNA processing; IEA:UniProt.
DR GO; GO:0009451; P:RNA modification; IEA:UniProt.
DR CDD; cd02440; AdoMet_MTases; 1.
DR Gene3D; 2.40.50.1070; -; 1.
DR Gene3D; 2.40.50.140; Nucleic acid-binding proteins; 1.
DR Gene3D; 3.40.50.150; Vaccinia Virus protein VP39; 1.
DR InterPro; IPR030390; MeTrfase_TrmA_AS.
DR InterPro; IPR030391; MeTrfase_TrmA_CS.
DR InterPro; IPR012340; NA-bd_OB-fold.
DR InterPro; IPR029063; SAM-dependent_MTases_sf.
DR InterPro; IPR002792; TRAM_dom.
DR InterPro; IPR010280; U5_MeTrfase_fam.
DR NCBIfam; TIGR00479; rumA; 1.
DR PANTHER; PTHR11061:SF45; -; 1.
DR PANTHER; PTHR11061; RNA M5U METHYLTRANSFERASE; 1.
DR Pfam; PF01938; TRAM; 1.
DR Pfam; PF05958; tRNA_U5-meth_tr; 1.
DR SUPFAM; SSF50249; Nucleic acid-binding proteins; 1.
DR SUPFAM; SSF53335; S-adenosyl-L-methionine-dependent methyltransferases; 1.
DR PROSITE; PS51687; SAM_MT_RNA_M5U; 1.
DR PROSITE; PS50926; TRAM; 1.
DR PROSITE; PS01230; TRMA_1; 1.
DR PROSITE; PS01231; TRMA_2; 1.
PE 3: Inferred from homology;
KW Methyltransferase {ECO:0000256|ARBA:ARBA00022603, ECO:0000256|PROSITE-
KW ProRule:PRU01024};
KW S-adenosyl-L-methionine {ECO:0000256|ARBA:ARBA00022691,
KW ECO:0000256|PROSITE-ProRule:PRU01024};
KW Transferase {ECO:0000256|ARBA:ARBA00022679, ECO:0000256|PROSITE-
KW ProRule:PRU01024}.
FT DOMAIN 2..60
FT /note="TRAM"
FT /evidence="ECO:0000259|PROSITE:PS50926"
FT ACT_SITE 408
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU10015"
FT ACT_SITE 408
FT /note="Nucleophile"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU01024"
FT BINDING 283
FT /ligand="S-adenosyl-L-methionine"
FT /ligand_id="ChEBI:CHEBI:59789"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU01024"
FT BINDING 312
FT /ligand="S-adenosyl-L-methionine"
FT /ligand_id="ChEBI:CHEBI:59789"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU01024"
FT BINDING 333
FT /ligand="S-adenosyl-L-methionine"
FT /ligand_id="ChEBI:CHEBI:59789"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU01024"
FT BINDING 381
FT /ligand="S-adenosyl-L-methionine"
FT /ligand_id="ChEBI:CHEBI:59789"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU01024"
SQ SEQUENCE 455 AA; 51852 MW; 740BBAA3280E0259 CRC64;
MNLRMKQKIP LKIKRMGING EGIGFYKRTL VFVPGALKGE DVFCQVTRVK ANFAEARLLV
INKKSKFRIK PQCPIYEECG GCQIMHLRYD KQLDFKEDLL RQALKKFKPQ GYEIYDIRPT
IGMDEPKHYR AKLQFQTRRF GGVTKAGLFQ EGSHHLVDIK DCLVQDELTQ SIVNHVCQLL
DKYSIPIYDE RRNAGIRTIM VRKAQATGQV QLIFVSSKEV NLVPVIRELT ADFSEIKTVA
VNFNASKSSS IYGDRTEILW GADTIAEKVL DYSFSLSPRA FYQLNPRQTQ VLYSQAVKAL
DVHENDEVID AYCGVGTIGF AFADKVKSVR GMDIIPEAIA DAKENARRMG YTNTHYETGK
AEDIIPQWYK EGYRATALVV DPPRTGLDDK LLKTICRYQP EKMVYVSCNV STLARDLVKL
TKSYDVVYIQ SVDMFPHTAR TEAVVKLVKR QKDLS
//
