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Database: UniProt
Entry: A0A1R1DYQ9_9BACL
LinkDB: A0A1R1DYQ9_9BACL
Original site: A0A1R1DYQ9_9BACL 
ID   A0A1R1DYQ9_9BACL        Unreviewed;       742 AA.
AC   A0A1R1DYQ9;
DT   12-APR-2017, integrated into UniProtKB/TrEMBL.
DT   12-APR-2017, sequence version 1.
DT   24-JAN-2024, entry version 26.
DE   RecName: Full=HTH araC/xylS-type domain-containing protein {ECO:0000259|PROSITE:PS01124};
GN   ORFNames=BK138_34390 {ECO:0000313|EMBL:OMF44734.1};
OS   Paenibacillus rhizosphaerae.
OC   Bacteria; Bacillota; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.
OX   NCBI_TaxID=297318 {ECO:0000313|EMBL:OMF44734.1, ECO:0000313|Proteomes:UP000187172};
RN   [1] {ECO:0000313|EMBL:OMF44734.1, ECO:0000313|Proteomes:UP000187172}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=FSL R5-0378 {ECO:0000313|EMBL:OMF44734.1,
RC   ECO:0000313|Proteomes:UP000187172};
RA   Beno S.M.;
RT   "Paenibacillus species isolates.";
RL   Submitted (NOV-2016) to the EMBL/GenBank/DDBJ databases.
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:OMF44734.1}.
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DR   EMBL; MRTP01000025; OMF44734.1; -; Genomic_DNA.
DR   RefSeq; WP_076176895.1; NZ_MRTP01000025.1.
DR   AlphaFoldDB; A0A1R1DYQ9; -.
DR   STRING; 297318.BK138_34390; -.
DR   Proteomes; UP000187172; Unassembled WGS sequence.
DR   GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR   GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR   GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR   Gene3D; 1.10.10.60; Homeodomain-like; 2.
DR   InterPro; IPR041522; CdaR_GGDEF.
DR   InterPro; IPR009057; Homeobox-like_sf.
DR   InterPro; IPR018060; HTH_AraC.
DR   InterPro; IPR018062; HTH_AraC-typ_CS.
DR   InterPro; IPR020449; Tscrpt_reg_HTH_AraC-type.
DR   PANTHER; PTHR43280; ARAC-FAMILY TRANSCRIPTIONAL REGULATOR; 1.
DR   PANTHER; PTHR43280:SF2; BIFUNCTIONAL TRANSCRIPTIONAL ACTIVATOR/DNA REPAIR ENZYME ADAA; 1.
DR   Pfam; PF17853; GGDEF_2; 1.
DR   Pfam; PF12833; HTH_18; 1.
DR   PRINTS; PR00032; HTHARAC.
DR   SMART; SM00342; HTH_ARAC; 1.
DR   SUPFAM; SSF46689; Homeodomain-like; 1.
DR   PROSITE; PS00041; HTH_ARAC_FAMILY_1; 1.
DR   PROSITE; PS01124; HTH_ARAC_FAMILY_2; 1.
PE   4: Predicted;
KW   DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW   Membrane {ECO:0000256|SAM:Phobius};
KW   Reference proteome {ECO:0000313|Proteomes:UP000187172};
KW   Transmembrane {ECO:0000256|SAM:Phobius};
KW   Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT   TRANSMEM        12..35
FT                   /note="Helical"
FT                   /evidence="ECO:0000256|SAM:Phobius"
FT   TRANSMEM        300..318
FT                   /note="Helical"
FT                   /evidence="ECO:0000256|SAM:Phobius"
FT   DOMAIN          627..726
FT                   /note="HTH araC/xylS-type"
FT                   /evidence="ECO:0000259|PROSITE:PS01124"
SQ   SEQUENCE   742 AA;  83138 MW;  4ED806A4098A491A CRC64;
     MKKLPFYRDT FFSRLIVSYT ALAVVLLGLA GGYLYTQANR MMVDEIARDS RSRLETAKDY
     VERTLLRKYE DQLQNKAVST VFIRDSSDLN VLLDNGWEGN LSRIAAFRQD LDMFKQVLEG
     VSNVTVYFRQ GDYIVDSANF YAKTEHSGDA AFMKGLQRSD LNRWIVRELP KGTQALTYVV
     NLPYGTLGNS PKGFLYIDVD MEYLERAVAS ILNSGSERLY IFNSSGQLIM QTAGATKEEM
     VLLQRSIGQG TTGTEMSGNK TGTLVLSHLE GGRPGSGLTY AMIRPMDSFV LASKQLKAKI
     FTGCGFVLML GLGISYLISK RFYLPMKRLV QHVRNLPGLN HMNTNEYQMI DSTLSFMGQK
     ILNLESQAQQ NEMKHLLLGA SLGVERLDAL PRHCRYQVAH IQLVDGRSEQ LKIIDELGGH
     HMPYELVILN PQESAIVFFM NEGGAVDEAA ALEPLARLQR ETGDGLRFGA GIGPPVQTIE
     EIPLSYRLAH QAYRYRFIYG PEALVSHAQI ATLDPKPPSF PLEIFKNALK AGDVTRANRF
     IDEVYAVLEQ RNLQLEAVEL ALLQMVSALY ESVIDLELQQ LVPPFDLFDE LKKDTLADTI
     GSIRDLSERI GIHVRESGNH AHEEVILKLK AYIDEHLDED LSLNVLSEVA SLAPAYISTL
     FGKVMNESFT EYVTRTRLKK AADMLLTQDN MSVSEIASLV GYRSIQYFHT KFKARYGVTP
     VQYRQRKAAA GEGGKPASKQ PL
//
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