ID A0A1R3FUK8_COCAP Unreviewed; 989 AA.
AC A0A1R3FUK8;
DT 12-APR-2017, integrated into UniProtKB/TrEMBL.
DT 12-APR-2017, sequence version 1.
DT 27-MAR-2024, entry version 29.
DE RecName: Full=Tr-type G domain-containing protein {ECO:0000259|PROSITE:PS51722};
GN ORFNames=CCACVL1_30942 {ECO:0000313|EMBL:OMO49541.1};
OS Corchorus capsularis (Jute).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus.
OX NCBI_TaxID=210143 {ECO:0000313|EMBL:OMO49541.1, ECO:0000313|Proteomes:UP000188268};
RN [1] {ECO:0000313|EMBL:OMO49541.1, ECO:0000313|Proteomes:UP000188268}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. CVL-1 {ECO:0000313|Proteomes:UP000188268};
RC TISSUE=Whole seedling {ECO:0000313|EMBL:OMO49541.1};
RA Alam M., Haque M.S., Islam M.S., Emdad E.M., Islam M.M., Ahmed B.,
RA Halim A., Hossen Q.M.M., Hossain M.Z., Ahmed R., Khan M.M., Islam R.,
RA Rashid M.M., Khan S.A., Rahman M.S., Alam M.;
RT "Corchorus capsularis genome sequencing.";
RL Submitted (SEP-2013) to the EMBL/GenBank/DDBJ databases.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:OMO49541.1}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AWWV01016460; OMO49541.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A1R3FUK8; -.
DR STRING; 210143.A0A1R3FUK8; -.
DR EnsemblPlants; OMO49541; OMO49541; CCACVL1_30942.
DR Gramene; OMO49541; OMO49541; CCACVL1_30942.
DR OMA; YIFRPIR; -.
DR OrthoDB; 166721at2759; -.
DR Proteomes; UP000188268; Unassembled WGS sequence.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-KW.
DR GO; GO:0005525; F:GTP binding; IEA:UniProtKB-KW.
DR GO; GO:0003924; F:GTPase activity; IEA:InterPro.
DR GO; GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
DR GO; GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
DR CDD; cd04098; eEF2_C_snRNP; 1.
DR CDD; cd04090; EF2_II_snRNP; 1.
DR CDD; cd01683; EF2_IV_snRNP; 1.
DR CDD; cd16264; snRNP_III; 1.
DR CDD; cd04167; Snu114p; 1.
DR Gene3D; 3.30.230.10; -; 1.
DR Gene3D; 3.30.70.240; -; 1.
DR Gene3D; 3.30.70.870; Elongation Factor G (Translational Gtpase), domain 3; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR Gene3D; 2.40.30.10; Translation factors; 1.
DR Gene3D; 3.90.1430.10; Yeast translation eEF2 (G' domain); 1.
DR InterPro; IPR035647; EFG_III/V.
DR InterPro; IPR000640; EFG_V-like.
DR InterPro; IPR004161; EFTu-like_2.
DR InterPro; IPR031950; EFTUD2_N.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR020568; Ribosomal_Su5_D2-typ_SF.
DR InterPro; IPR014721; Ribsml_uS5_D2-typ_fold_subgr.
DR InterPro; IPR005225; Small_GTP-bd_dom.
DR InterPro; IPR044121; Snu114_GTP-bd.
DR InterPro; IPR000795; T_Tr_GTP-bd_dom.
DR InterPro; IPR009000; Transl_B-barrel_sf.
DR InterPro; IPR005517; Transl_elong_EFG/EF2_IV.
DR InterPro; IPR035655; U5-116kDa_C.
DR NCBIfam; TIGR00231; small_GTP; 1.
DR PANTHER; PTHR42908:SF6; 116 KDA U5 SMALL NUCLEAR RIBONUCLEOPROTEIN COMPONENT; 1.
DR PANTHER; PTHR42908; TRANSLATION ELONGATION FACTOR-RELATED; 1.
DR Pfam; PF00679; EFG_C; 1.
DR Pfam; PF03764; EFG_IV; 1.
DR Pfam; PF16004; EFTUD2; 1.
DR Pfam; PF00009; GTP_EFTU; 1.
DR Pfam; PF03144; GTP_EFTU_D2; 1.
DR PRINTS; PR00315; ELONGATNFCT.
DR SMART; SM00838; EFG_C; 1.
DR SMART; SM00889; EFG_IV; 1.
DR SUPFAM; SSF54980; EF-G C-terminal domain-like; 2.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR SUPFAM; SSF54211; Ribosomal protein S5 domain 2-like; 1.
DR SUPFAM; SSF50447; Translation proteins; 1.
DR PROSITE; PS51722; G_TR_2; 1.
PE 4: Predicted;
KW GTP-binding {ECO:0000256|ARBA:ARBA00023134};
KW mRNA processing {ECO:0000256|ARBA:ARBA00022664};
KW mRNA splicing {ECO:0000256|ARBA:ARBA00023187};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000188268}.
FT DOMAIN 139..351
FT /note="Tr-type G"
FT /evidence="ECO:0000259|PROSITE:PS51722"
FT REGION 1..56
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 20..37
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 989 AA; 110429 MW; F523E94B256FC295 CRC64;
MDDNLYDEFG NYIGPEIESD RESEGEEEED EDLPDRHAPE EGEESDGDAA PGASNGWITA
ANDVDMDNQI VLAEDKKYYP TAEEVYGEDV ETLVMDEDEQ PLEQPIIKPV RNIKFEVGVK
DSSTYVSMQF LIGLMSNPGL VRNVALVGHL QHGKTVFMDM LVEQTHHMNT FDENSEKHMR
YTDTRIDEQE RRISIKTIPM SLVLEDSNSK SYLCNIMDTP GHVNFSDEMT AALRLADGAV
LVVDAAEGVM VNTERAIRHA IQDRLPIVVV INKVDRLITE LKLPPKDAYH KLRHTLEVIN
TQISTVSTTA GNVQLIDPAA GNVCFASASA GWSFTLQSFA KLYVKLHGIP FDAEKFASRL
WGDIYYHPDT RTFKRKPPGG GERSFVEFVL EPLYKIYSQV IGEHRKSVES TLAELGVTLS
NAAYKLNVRP LLRLACSTVF GSSSGFTDML VQHIPSPKDA AAKKVDHIYT GPKHSTIYEA
MVDCDPSGPL MVNVTKLYPK SDCSVFDAFG RVYSGTIQTG QTLRVLGEGY SPDDEEDMTV
KEVTKLWVYQ ARYRIPISSA PPGCWVLIEG VDASIMKTAT LCNVHLDEDV YIFRPLQFNT
LPVVKTATEP LNPSELPKMV EGLRKISKSY PLAITKVEES GEHTILGTGE LYLDSIMKDL
RELYSEVEVK VADPVVSFCE TVVESSSMKC FAETPNKKNK ITMIAEPLER GLAEDIENGV
VSTDWSRKQL GDFFKTKYDW DLLAARSIWA FGPDKQGPNI LLDDTLPTEV DKQLLGSVRD
SIVQGFQWGA REGPLCDEPI RNVKFKIVDA KIASESLHRG SGQIIPTARR VAYSAFLMAT
PRLMEPVYYV EIQTPIDCVS AIYTVLSRRR GHVTADVPQP GTPAYIVKAF LPVIESFGFE
TDLRYHTQGQ AFCLSVFDHW AIVPGDPLDK TIVLRPLEPA PIQHLAREFM VKTRRRKGMS
EDVSINKFFD EAMVAELAQQ AADVNPHIL
//
