ID   A0A1R3G006_COCAP        Unreviewed;       412 AA.
AC   A0A1R3G006;
DT   12-APR-2017, integrated into UniProtKB/TrEMBL.
DT   12-APR-2017, sequence version 1.
DT   27-MAR-2024, entry version 22.
DE   RecName: Full=RNase H type-1 domain-containing protein {ECO:0000259|PROSITE:PS50879};
GN   ORFNames=CCACVL1_29818 {ECO:0000313|EMBL:OMO51393.1};
OS   Corchorus capsularis (Jute).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus.
OX   NCBI_TaxID=210143 {ECO:0000313|EMBL:OMO51393.1, ECO:0000313|Proteomes:UP000188268};
RN   [1] {ECO:0000313|EMBL:OMO51393.1, ECO:0000313|Proteomes:UP000188268}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. CVL-1 {ECO:0000313|Proteomes:UP000188268};
RC   TISSUE=Whole seedling {ECO:0000313|EMBL:OMO51393.1};
RA   Alam M., Haque M.S., Islam M.S., Emdad E.M., Islam M.M., Ahmed B.,
RA   Halim A., Hossen Q.M.M., Hossain M.Z., Ahmed R., Khan M.M., Islam R.,
RA   Rashid M.M., Khan S.A., Rahman M.S., Alam M.;
RT   "Corchorus capsularis genome sequencing.";
RL   Submitted (SEP-2013) to the EMBL/GenBank/DDBJ databases.
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:OMO51393.1}.
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DR   EMBL; AWWV01015834; OMO51393.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A1R3G006; -.
DR   STRING; 210143.A0A1R3G006; -.
DR   EnsemblPlants; OMO51393; OMO51393; CCACVL1_29818.
DR   Gramene; OMO51393; OMO51393; CCACVL1_29818.
DR   OMA; IREIWIA; -.
DR   OrthoDB; 626342at2759; -.
DR   Proteomes; UP000188268; Unassembled WGS sequence.
DR   GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR   GO; GO:0004523; F:RNA-DNA hybrid ribonuclease activity; IEA:InterPro.
DR   CDD; cd06222; RNase_H_like; 1.
DR   Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR   InterPro; IPR044730; RNase_H-like_dom_plant.
DR   InterPro; IPR012337; RNaseH-like_sf.
DR   InterPro; IPR002156; RNaseH_domain.
DR   InterPro; IPR036397; RNaseH_sf.
DR   InterPro; IPR026960; RVT-Znf.
DR   PANTHER; PTHR47723; OS05G0353850 PROTEIN; 1.
DR   PANTHER; PTHR47723:SF17; POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN; 1.
DR   Pfam; PF13456; RVT_3; 1.
DR   Pfam; PF13966; zf-RVT; 1.
DR   SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR   PROSITE; PS50879; RNASE_H_1; 1.
PE   4: Predicted;
KW   Reference proteome {ECO:0000313|Proteomes:UP000188268}.
FT   DOMAIN          243..373
FT                   /note="RNase H type-1"
FT                   /evidence="ECO:0000259|PROSITE:PS50879"
SQ   SEQUENCE   412 AA;  46434 MW;  DAFFFFAA4C0A3478 CRC64;
     MGCGLDRGFY HDVPLYMYHE DEVAYHTMRD ASSSSSHPPI TCCSNQKEKE SSLQLPGSFL
     QPIRRVRLPQ QAILGVPRQL TSNSRDTPCW YLSQNGKFSL SSAYNLIRDL PREDQYPTDW
     RWVWKLNILP KLKFFIWECA HGILPTRELL AHRGLDDPSH CILCNNAQEY IHHLFKECPF
     AASIWNKIGV GLPDIAFDHL DKADGNTTFE VACFKAVEFF VVNGKTKILP IAPIIQVSWK
     PPDQGWLKLN TDGSSLGNLG LVGSGSVIRD NEGNWVRGSI RHLGFCTNFV AEFWALRDGL
     FLAVSLNIRK LVIELDSTTV IATLNSQCPD NLFIQPIVND YRLLISKLEA VKIQHVFREG
     NGVADALAKL ASFSSCYLLE DSYSVLFDPP FCIKDLLVLD AVGHMFCRTI SI
//