ID A0A1R3GMG8_COCAP Unreviewed; 726 AA.
AC A0A1R3GMG8;
DT 12-APR-2017, integrated into UniProtKB/TrEMBL.
DT 12-APR-2017, sequence version 1.
DT 27-MAR-2024, entry version 20.
DE RecName: Full=poly(A)-specific ribonuclease {ECO:0000256|ARBA:ARBA00012161};
DE EC=3.1.13.4 {ECO:0000256|ARBA:ARBA00012161};
GN ORFNames=CCACVL1_24982 {ECO:0000313|EMBL:OMO59237.1};
OS Corchorus capsularis (Jute).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus.
OX NCBI_TaxID=210143 {ECO:0000313|EMBL:OMO59237.1, ECO:0000313|Proteomes:UP000188268};
RN [1] {ECO:0000313|EMBL:OMO59237.1, ECO:0000313|Proteomes:UP000188268}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. CVL-1 {ECO:0000313|Proteomes:UP000188268};
RC TISSUE=Whole seedling {ECO:0000313|EMBL:OMO59237.1};
RA Alam M., Haque M.S., Islam M.S., Emdad E.M., Islam M.M., Ahmed B.,
RA Halim A., Hossen Q.M.M., Hossain M.Z., Ahmed R., Khan M.M., Islam R.,
RA Rashid M.M., Khan S.A., Rahman M.S., Alam M.;
RT "Corchorus capsularis genome sequencing.";
RL Submitted (SEP-2013) to the EMBL/GenBank/DDBJ databases.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:OMO59237.1}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AWWV01014005; OMO59237.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A1R3GMG8; -.
DR STRING; 210143.A0A1R3GMG8; -.
DR EnsemblPlants; OMO59237; OMO59237; CCACVL1_24982.
DR Gramene; OMO59237; OMO59237; CCACVL1_24982.
DR OrthoDB; 37764at2759; -.
DR Proteomes; UP000188268; Unassembled WGS sequence.
DR GO; GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.
DR GO; GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR Gene3D; 3.60.10.10; Endonuclease/exonuclease/phosphatase; 1.
DR InterPro; IPR036691; Endo/exonu/phosph_ase_sf.
DR InterPro; IPR005135; Endo/exonuclease/phosphatase.
DR PANTHER; PTHR12121; CARBON CATABOLITE REPRESSOR PROTEIN 4; 1.
DR PANTHER; PTHR12121:SF34; POLY(A)-SPECIFIC RIBONUCLEASE; 1.
DR Pfam; PF03372; Exo_endo_phos; 1.
DR SUPFAM; SSF56219; DNase I-like; 1.
PE 4: Predicted;
KW Endonuclease {ECO:0000313|EMBL:OMO59237.1};
KW Exonuclease {ECO:0000313|EMBL:OMO59237.1};
KW Hydrolase {ECO:0000313|EMBL:OMO59237.1};
KW Nuclease {ECO:0000313|EMBL:OMO59237.1};
KW Reference proteome {ECO:0000313|Proteomes:UP000188268};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884}.
FT DOMAIN 312..415
FT /note="Endonuclease/exonuclease/phosphatase"
FT /evidence="ECO:0000259|Pfam:PF03372"
SQ SEQUENCE 726 AA; 83940 MW; E94CDE6569C4677C CRC64;
MFRYVSSRIK DAIRQRHKHR HKYDNYDPVV KKVVDRLELL WEDIIYLRAT PKGLRKEEED
YEAYLEPYGE AIEHLTTALT EFATTSRLIF EAEVGFYDED SARRVLGPLA RKLDAWHNLC
IKVIDDFRDG DPKGEYSLTI IKTIRAVARL SLTDKQTPTD PIFENIELLM KDALKKKHNP
TPKTFDEYGI SIIRHQYSRT PMVNVDLDFH FDVQYRGSNK PSVSFFYAWY KEKTPNSLPI
VWDTKVASIN RSFKPSERDK GKRLKLECFV MVGVDGEILP TNVTITNKVE PFYTDHLRRW
KTRGDTGTFN VLSYNILADL HEHCFTSRYH AWEYRREALL LELNRYDVDI LCLQEVQDNH
FGEFLEPQLR RWGYLVQYKT KNHKVTSKGK EVKDGCATFY RGRRFKKIRH YEVNYEEKAE
LELEDYSGDK TELIREELVK DNIALILELE DSKNDSLICV VDTLARELQD FTKSKKTAII
ICGDFNSYQK SPPYILLVEG SLSPFSELVR DIDEHGFFQN AKNAKLTHEL VLLIYAHSKK
VVLRTVQESA YAPGELPFTK KYNEILDYIF YSISSISVQF PPNTGTPLDR TVGVSPIEPR
QLENLKDSVV YNYGRIEVKI SGSLGIAWKS SPPLRVAASN GHDVNVIREI IRHCPDAAEL
LDSCGRNAFH AAILSGKDDS SYHAMCKPRR REDAVFQANG TDSFNGSLNV LKQQFRLLSF
SLKADV
//
