ID A0A1R3GQH4_COCAP Unreviewed; 1254 AA.
AC A0A1R3GQH4;
DT 12-APR-2017, integrated into UniProtKB/TrEMBL.
DT 12-APR-2017, sequence version 1.
DT 27-MAR-2024, entry version 31.
DE RecName: Full=ABC transporter, integral membrane type 1 {ECO:0008006|Google:ProtNLM};
GN ORFNames=CCACVL1_24246 {ECO:0000313|EMBL:OMO60322.1};
OS Corchorus capsularis (Jute).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus.
OX NCBI_TaxID=210143 {ECO:0000313|EMBL:OMO60322.1, ECO:0000313|Proteomes:UP000188268};
RN [1] {ECO:0000313|EMBL:OMO60322.1, ECO:0000313|Proteomes:UP000188268}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. CVL-1 {ECO:0000313|Proteomes:UP000188268};
RC TISSUE=Whole seedling {ECO:0000313|EMBL:OMO60322.1};
RA Alam M., Haque M.S., Islam M.S., Emdad E.M., Islam M.M., Ahmed B.,
RA Halim A., Hossen Q.M.M., Hossain M.Z., Ahmed R., Khan M.M., Islam R.,
RA Rashid M.M., Khan S.A., Rahman M.S., Alam M.;
RT "Corchorus capsularis genome sequencing.";
RL Submitted (SEP-2013) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000256|ARBA:ARBA00004141}; Multi-
CC pass membrane protein {ECO:0000256|ARBA:ARBA00004141}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:OMO60322.1}.
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DR EMBL; AWWV01013718; OMO60322.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A1R3GQH4; -.
DR STRING; 210143.A0A1R3GQH4; -.
DR EnsemblPlants; OMO60322; OMO60322; CCACVL1_24246.
DR Gramene; OMO60322; OMO60322; CCACVL1_24246.
DR OMA; TYFPEYV; -.
DR OrthoDB; 5487044at2759; -.
DR Proteomes; UP000188268; Unassembled WGS sequence.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0140359; F:ABC-type transporter activity; IEA:InterPro.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016887; F:ATP hydrolysis activity; IEA:InterPro.
DR CDD; cd18577; ABC_6TM_Pgp_ABCB1_D1_like; 1.
DR CDD; cd18578; ABC_6TM_Pgp_ABCB1_D2_like; 1.
DR CDD; cd03249; ABC_MTABC3_MDL1_MDL2; 2.
DR Gene3D; 1.20.1560.10; ABC transporter type 1, transmembrane domain; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 2.
DR InterPro; IPR003593; AAA+_ATPase.
DR InterPro; IPR011527; ABC1_TM_dom.
DR InterPro; IPR036640; ABC1_TM_sf.
DR InterPro; IPR003439; ABC_transporter-like_ATP-bd.
DR InterPro; IPR017871; ABC_transporter-like_CS.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR039421; Type_1_exporter.
DR PANTHER; PTHR24222:SF48; ABC TRANSMEMBRANE TYPE-1 DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR24222; ABC TRANSPORTER B FAMILY; 1.
DR Pfam; PF00664; ABC_membrane; 2.
DR Pfam; PF00005; ABC_tran; 2.
DR SMART; SM00382; AAA; 2.
DR SUPFAM; SSF90123; ABC transporter transmembrane region; 2.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 2.
DR PROSITE; PS50929; ABC_TM1F; 2.
DR PROSITE; PS00211; ABC_TRANSPORTER_1; 2.
DR PROSITE; PS50893; ABC_TRANSPORTER_2; 2.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Membrane {ECO:0000256|ARBA:ARBA00023136, ECO:0000256|SAM:Phobius};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000188268};
KW Transmembrane {ECO:0000256|ARBA:ARBA00022692, ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|ARBA:ARBA00022989,
KW ECO:0000256|SAM:Phobius}.
FT TRANSMEM 18..40
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 63..86
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 146..165
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 171..190
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 246..268
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 280..301
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 684..713
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 725..743
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 806..824
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 830..849
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 906..930
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 21..309
FT /note="ABC transmembrane type-1"
FT /evidence="ECO:0000259|PROSITE:PS50929"
FT DOMAIN 344..580
FT /note="ABC transporter"
FT /evidence="ECO:0000259|PROSITE:PS50893"
FT DOMAIN 684..971
FT /note="ABC transmembrane type-1"
FT /evidence="ECO:0000259|PROSITE:PS50929"
FT DOMAIN 1007..1244
FT /note="ABC transporter"
FT /evidence="ECO:0000259|PROSITE:PS50893"
SQ SEQUENCE 1254 AA; 137153 MW; 4D0872271A6D95D4 CRC64;
MASKGDGLFR YADGIDKLLL LFGTLGSIGD GMMSPVNMYI LSGALNDYGD IDQSFSIAIV
NKYALRLLYC AIGVGVSAFI EGVCWTRSAE RQASRMRMEY LKSVLRQEVG FFDNQTASSS
TFQVISTVTS DAHSIQDTIA DKIPNCLAHL TSFVLCLVVA FKLSWRLALA ALPFALMFVI
PGLGFGKLLM NIGAEMKTAY GDAGGVVEQA ISSIRTVYSY VAEHQTLDNF STALQRSMEL
GVKQGLTKGL LIGSMGIIYA AWAFQAWVGG VLVTEKGESG GAVFVAGICI ILSGLSVMSA
LPNLSSITEA KHAASKIFEM IDRNPTINSE NEKPKALSHV RGEVEFKDVD FSYPSRPDIR
VLRKLNLRVQ AGKMVGLVGG SGSGKSTIIS LLERFYDPIN GDILLDGCRI KKLELKWLRS
QMGLVNQEPI LFATSIKENI LFGKEGASME LVIKAAKAAN AHDFIEKLPA GYETQVGQFG
LQLSGGQKQR VAIARALIRD PKILLLDEAT SALDAQSEKI VQEALDHASK GRTTIVVAHR
LSTIRKADLI AVLQSGKVIE SGSHHELIQM NGGEGGAYKK MVELQQTAMQ NESSDGFYNP
LEGRNKLRMM GGGQTPQTPA SVRSSYHSSP AYPFSPIMSI SVTNSVEIHS YENQNDNSIK
NSSHASLSGW RLIKMNAPEW KRTLLGCIGA VITGAITSVY AYFLGTVVAV YFIKDHSKIK
SEIRLYSLIF LGLAGLSFIG NLLQHYNFAI MGERLVKRIR EKTLAKVLTF EIGWFDQDEN
SSAAICARIS TEASTFRSFI ADRMSLLVQV FFSAFLAFLF ALIVTWRVAI VMIAFQPLII
GSFYSRSVVM KSMSEKAQKS QNAGSQLASE AIINHRTITA FSSQKRILRL FGATMREPRQ
QSIKQGYISG LALFSSQFLT TASISLTFWY GGRLINQGLV TPKHLFQAFF ILMSTGKNIA
DTGSMTSDLA KGSGAIKRIF AILDRKTEIE PEDYKGLEVE ETNKGEIELK NVSFSYPTRP
NQMIFTGLNL KIEAGKTMAL VGQSGSGKST IIGLIERFYD PQKGSILIDG YDIKKYNLRN
LRSHIALVSQ EPTLFAGTIR QNIAYGQEKN VTESEVRKAA MLANAHEFIS SMKDGYETYC
GERGVQLSGG QKQRIALARA ILKKPMILLL DEATSALDSE SESLVQKALD KMMIKRTCVV
VAHRLSTIQK ADSIAVIQNG KVVEKGSHSS LLAIGRAGAY NSLIKLQSGQ SPYR
//
