ID A0A1R3GZB8_9ROSI Unreviewed; 625 AA.
AC A0A1R3GZB8;
DT 12-APR-2017, integrated into UniProtKB/TrEMBL.
DT 12-APR-2017, sequence version 1.
DT 24-JAN-2024, entry version 21.
DE SubName: Full=Zinc finger, U1-type {ECO:0000313|EMBL:OMO63464.1};
GN ORFNames=COLO4_32414 {ECO:0000313|EMBL:OMO63464.1};
OS Corchorus olitorius.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus.
OX NCBI_TaxID=93759 {ECO:0000313|EMBL:OMO63464.1, ECO:0000313|Proteomes:UP000187203};
RN [1] {ECO:0000313|Proteomes:UP000187203}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. O-4 {ECO:0000313|Proteomes:UP000187203};
RA Alam M., Haque M.S., Islam M.S., Emdad E.M., Islam M.M., Ahmed B.,
RA Halim A., Hossen Q.M.M., Hossain M.Z., Ahmed R., Khan M.M., Islam R.,
RA Rashid M.M., Khan S.A., Rahman M.S., Alam M., Yahiya A.S., Khan M.S.,
RA Azam M.S., Haque T., Lashkar M.Z.H., Akhand A.I., Morshed G., Roy S.,
RA Uddin K.S., Rabeya T., Hossain A.S., Chowdhury A., Snigdha A.R.,
RA Mortoza M.S., Matin S.A., Hoque S.M.E., Islam M.K., Roy D.K., Haider R.,
RA Moosa M.M., Elias S.M., Hasan A.M., Jahan S., Shafiuddin M., Mahmood N.,
RA Shommy N.S.;
RT "Corchorus olitorius genome sequencing.";
RL Submitted (SEP-2013) to the EMBL/GenBank/DDBJ databases.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:OMO63464.1}.
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DR EMBL; AWUE01021113; OMO63464.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A1R3GZB8; -.
DR OrthoDB; 992162at2759; -.
DR Proteomes; UP000187203; Unassembled WGS sequence.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR Gene3D; 3.30.160.60; Classic Zinc Finger; 3.
DR InterPro; IPR003604; Matrin/U1-like-C_Znf_C2H2.
DR InterPro; IPR004345; TB2_DP1_HVA22.
DR InterPro; IPR036236; Znf_C2H2_sf.
DR InterPro; IPR013087; Znf_C2H2_type.
DR PANTHER; PTHR47487:SF8; OS06G0651300 PROTEIN; 1.
DR PANTHER; PTHR47487; OS06G0651300 PROTEIN-RELATED; 1.
DR Pfam; PF03134; TB2_DP1_HVA22; 1.
DR Pfam; PF12874; zf-met; 3.
DR SMART; SM00355; ZnF_C2H2; 3.
DR SMART; SM00451; ZnF_U1; 3.
DR SUPFAM; SSF57667; beta-beta-alpha zinc fingers; 3.
DR PROSITE; PS00028; ZINC_FINGER_C2H2_1; 1.
PE 4: Predicted;
KW Membrane {ECO:0000256|SAM:Phobius};
KW Reference proteome {ECO:0000313|Proteomes:UP000187203};
KW Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT TRANSMEM 47..63
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 505..527
FT /note="C2H2-type"
FT /evidence="ECO:0000259|PROSITE:PS00028"
FT REGION 255..349
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 279..318
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 327..349
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 625 AA; 68982 MW; 561078B3CB1DB812 CRC64;
MGFAAFVKFA LICFDALAWP LFALGYPLRA SIQAIEANSI SDTKKIVTYW VFFSMISLFE
HAFMGSLQWL PFWPYMKLTV VCWLMIPGFD GAFYVYNHIV HPCLYLDMQT IINWLKKQLE
FFLKDDFLAE ADKYVKAHGP EALEKLIASE SKGRVLQKDI KPVQLMEEKE IAAVKAIPET
EPNASQTQAK MFTVACPVIK EKSCWVLPEI PSDKQVQKEW TCALCQVTTT CEQNLKMHLE
GRRHKAACEE LIKAKNQPSK AKVSPASAVE DSKKEPEKCA SSCSSPASQK KQQPSKVQVS
AASVAKNSDV SKNDAEKCAA SNGTHIPSKA VDLTTGISNG NKPDVPNEDS NRFLANNMVG
NQLKIKENVQ DQQQIEKKHA GDMNPQFRCT ICHINCTRLE DMNCHLSGKK HLAKVSAASV
AKNSDVSKND AEKWATSNGT HISSKVVDLP TGISDGNKAD LPNEEPNKFL ANNTTGNQLQ
HKEIVQDQQQ IGTKHAGDKN PQFQCTICNI SCARSEDLNC HLSGKKHLAK VSAASVAKKS
DVTKNDAEKC ATSNSTHIST KAVDLTTGIS NGNKPDLPNE EQNRFLANNM AGDQLNTRKM
YKTSSRLGRN MLGMRIPNFS APSVT
//
