ID A0A1R3H0G3_COCAP Unreviewed; 494 AA.
AC A0A1R3H0G3;
DT 12-APR-2017, integrated into UniProtKB/TrEMBL.
DT 12-APR-2017, sequence version 1.
DT 27-MAR-2024, entry version 32.
DE SubName: Full=Zinc finger, RING-type {ECO:0000313|EMBL:OMO63746.1};
GN ORFNames=CCACVL1_22310 {ECO:0000313|EMBL:OMO63746.1};
OS Corchorus capsularis (Jute).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus.
OX NCBI_TaxID=210143 {ECO:0000313|EMBL:OMO63746.1, ECO:0000313|Proteomes:UP000188268};
RN [1] {ECO:0000313|EMBL:OMO63746.1, ECO:0000313|Proteomes:UP000188268}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. CVL-1 {ECO:0000313|Proteomes:UP000188268};
RC TISSUE=Whole seedling {ECO:0000313|EMBL:OMO63746.1};
RA Alam M., Haque M.S., Islam M.S., Emdad E.M., Islam M.M., Ahmed B.,
RA Halim A., Hossen Q.M.M., Hossain M.Z., Ahmed R., Khan M.M., Islam R.,
RA Rashid M.M., Khan S.A., Rahman M.S., Alam M.;
RT "Corchorus capsularis genome sequencing.";
RL Submitted (SEP-2013) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Chromosome {ECO:0000256|ARBA:ARBA00004286}.
CC Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the histone H2A family.
CC {ECO:0000256|ARBA:ARBA00010691}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:OMO63746.1}.
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DR EMBL; AWWV01012880; OMO63746.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A1R3H0G3; -.
DR STRING; 210143.A0A1R3H0G3; -.
DR EnsemblPlants; OMO63746; OMO63746; CCACVL1_22310.
DR Gramene; OMO63746; OMO63746; CCACVL1_22310.
DR OrthoDB; 325136at2759; -.
DR Proteomes; UP000188268; Unassembled WGS sequence.
DR GO; GO:0000786; C:nucleosome; IEA:InterPro.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR GO; GO:0046982; F:protein heterodimerization activity; IEA:InterPro.
DR GO; GO:0030527; F:structural constituent of chromatin; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR CDD; cd16464; RING-H2_Pirh2-like; 1.
DR CDD; cd01814; Ubl_MUBs_plant; 1.
DR Gene3D; 2.20.28.10; -; 1.
DR Gene3D; 1.10.20.10; Histone, subunit A; 1.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR009072; Histone-fold.
DR InterPro; IPR002119; Histone_H2A.
DR InterPro; IPR032458; Histone_H2A_CS.
DR InterPro; IPR039512; RCHY1_zinc-ribbon.
DR InterPro; IPR000626; Ubiquitin-like_dom.
DR InterPro; IPR029071; Ubiquitin-like_domsf.
DR InterPro; IPR039540; UBL3-like_ubiquitin_dom.
DR InterPro; IPR008913; Znf_CHY.
DR InterPro; IPR037274; Znf_CHY_sf.
DR InterPro; IPR017921; Znf_CTCHY.
DR InterPro; IPR037275; Znf_CTCHY_sf.
DR InterPro; IPR001841; Znf_RING.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR PANTHER; PTHR21319; RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1; 1.
DR PANTHER; PTHR21319:SF12; ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN; 1.
DR Pfam; PF13881; Rad60-SLD_2; 1.
DR Pfam; PF05495; zf-CHY; 1.
DR Pfam; PF13639; zf-RING_2; 1.
DR Pfam; PF14599; zinc_ribbon_6; 1.
DR PRINTS; PR00620; HISTONEH2A.
DR SMART; SM00414; H2A; 1.
DR SMART; SM00184; RING; 1.
DR SUPFAM; SSF161219; CHY zinc finger-like; 1.
DR SUPFAM; SSF47113; Histone-fold; 1.
DR SUPFAM; SSF57850; RING/U-box; 1.
DR SUPFAM; SSF54236; Ubiquitin-like; 1.
DR SUPFAM; SSF161245; Zinc hairpin stack; 1.
DR PROSITE; PS00046; HISTONE_H2A; 1.
DR PROSITE; PS50053; UBIQUITIN_2; 1.
DR PROSITE; PS51266; ZF_CHY; 1.
DR PROSITE; PS51270; ZF_CTCHY; 1.
DR PROSITE; PS50089; ZF_RING_2; 1.
PE 3: Inferred from homology;
KW Chromosome {ECO:0000256|ARBA:ARBA00022454};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000188268};
KW Transferase {ECO:0000256|ARBA:ARBA00022679};
KW Ubl conjugation pathway {ECO:0000256|ARBA:ARBA00022786};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00601}.
FT DOMAIN 8..76
FT /note="Ubiquitin-like"
FT /evidence="ECO:0000259|PROSITE:PS50053"
FT DOMAIN 109..184
FT /note="CHY-type"
FT /evidence="ECO:0000259|PROSITE:PS51266"
FT DOMAIN 186..250
FT /note="CTCHY-type"
FT /evidence="ECO:0000259|PROSITE:PS51270"
FT DOMAIN 251..294
FT /note="RING-type"
FT /evidence="ECO:0000259|PROSITE:PS50089"
FT REGION 402..425
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 494 AA; 55056 MW; BB51B0E45A4EE325 CRC64;
MAEGEELIEL KFRIFDGTDI AHSTYASSIT VATLKQKIVA EWPQDKTVTP KSINDLKIIH
AGKVLENNKT LADSRITFGD LPVGVITMHV VVQPAVAKNK TEKNQEESRK LNSCGCEHYK
RRCSIRAPCC NKIFPCRHCH NEAANSLSDP KDHHDLIRQD VKQVICSICD TEQEVAQVCC
NCGVNMGEYF CNICKFYDDD TTKGQFHCDD CGICRVGGRD KFFHCQKCGS CYMMNLRDNH
LCVENSMKTG CPICYEYLFD SVKGTQILKC GHTIHMDCFE QMMKQNQYRC PICSKSVLDM
TSIWEDLDTD IGATSMPVEY QFEVVSILCN DCNTTSQVKF HILGLKCRQR TTQTTPYDRP
PTAIRNPSGG AGKKGWLSKL VDLAQRLITS SAHRPFASVF RKRLPAPPPH PPQALEPGAS
ISTSRSSKAG LQFPVGRIAW FLKAGKYPER VRVSVPVYLA AILEYLAAEA CSIVEGLEGL
KISVPPNGYA TGRS
//
