ID A0A1R3H3U0_COCAP Unreviewed; 1916 AA.
AC A0A1R3H3U0;
DT 12-APR-2017, integrated into UniProtKB/TrEMBL.
DT 12-APR-2017, sequence version 1.
DT 27-MAR-2024, entry version 23.
DE SubName: Full=Reverse transcriptase {ECO:0000313|EMBL:OMO65001.1};
GN ORFNames=CCACVL1_21589 {ECO:0000313|EMBL:OMO65001.1};
OS Corchorus capsularis (Jute).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus.
OX NCBI_TaxID=210143 {ECO:0000313|EMBL:OMO65001.1, ECO:0000313|Proteomes:UP000188268};
RN [1] {ECO:0000313|EMBL:OMO65001.1, ECO:0000313|Proteomes:UP000188268}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. CVL-1 {ECO:0000313|Proteomes:UP000188268};
RC TISSUE=Whole seedling {ECO:0000313|EMBL:OMO65001.1};
RA Alam M., Haque M.S., Islam M.S., Emdad E.M., Islam M.M., Ahmed B.,
RA Halim A., Hossen Q.M.M., Hossain M.Z., Ahmed R., Khan M.M., Islam R.,
RA Rashid M.M., Khan S.A., Rahman M.S., Alam M.;
RT "Corchorus capsularis genome sequencing.";
RL Submitted (SEP-2013) to the EMBL/GenBank/DDBJ databases.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:OMO65001.1}.
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DR EMBL; AWWV01012690; OMO65001.1; -; Genomic_DNA.
DR EnsemblPlants; OMO65001; OMO65001; CCACVL1_21589.
DR Gramene; OMO65001; OMO65001; CCACVL1_21589.
DR OrthoDB; 1132397at2759; -.
DR Proteomes; UP000188268; Unassembled WGS sequence.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0003964; F:RNA-directed DNA polymerase activity; IEA:UniProtKB-KW.
DR GO; GO:0004523; F:RNA-DNA hybrid ribonuclease activity; IEA:InterPro.
DR CDD; cd09279; RNase_HI_like; 1.
DR CDD; cd01647; RT_LTR; 1.
DR Gene3D; 3.30.70.270; -; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 3.
DR InterPro; IPR043502; DNA/RNA_pol_sf.
DR InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR002156; RNaseH_domain.
DR InterPro; IPR036397; RNaseH_sf.
DR InterPro; IPR000477; RT_dom.
DR PANTHER; PTHR24559:SF437; RIBONUCLEASE H; 1.
DR PANTHER; PTHR24559; TRANSPOSON TY3-I GAG-POL POLYPROTEIN; 1.
DR Pfam; PF00078; RVT_1; 1.
DR Pfam; PF13456; RVT_3; 1.
DR SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 2.
DR PROSITE; PS50879; RNASE_H_1; 1.
DR PROSITE; PS50878; RT_POL; 1.
PE 4: Predicted;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nucleotidyltransferase {ECO:0000313|EMBL:OMO65001.1};
KW Reference proteome {ECO:0000313|Proteomes:UP000188268};
KW RNA-directed DNA polymerase {ECO:0000313|EMBL:OMO65001.1};
KW Transferase {ECO:0000313|EMBL:OMO65001.1}.
FT DOMAIN 884..1063
FT /note="Reverse transcriptase"
FT /evidence="ECO:0000259|PROSITE:PS50878"
FT DOMAIN 1193..1322
FT /note="RNase H type-1"
FT /evidence="ECO:0000259|PROSITE:PS50879"
FT REGION 325..352
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1631..1650
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1829..1916
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 64..112
FT /evidence="ECO:0000256|SAM:Coils"
FT COMPBIAS 335..349
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1631..1646
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1830..1898
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1916 AA; 218777 MW; 0AFD1FE66391B50D CRC64;
MTFVKKGGRD ARVKPEYPDW HQMRVKDIKV PPPTDLEAAV GEEMEDIVMK LTMQLKRQED
DAEAQRIAEV NRQLMIRIEE VEKKAEEMST KCREAEEEVK GERKLKEKAM AQNRVLKRDF
EAECRERTSL AKKNKAAKIA NSYLMEKLDF EMGESSKNAY DQRCEQIRFL LDQIRVGLLQ
VKDIRDQARD VLPCLAPFGQ RLQPVADSLE DTVSKCNETL VYFRQFETSF HTIMEEYVAR
LQRVEQTQEE LRWDMKNMAA MIQQLVEERI MDKLPFTCPP VVGFKPLIPD PPKFPVRPQG
YYLQNLCHSR YSGVVKVEGE TPFYPKPQNK RLRAPRAAQQ GNSANQPGSK DLAVEEIPID
PIPYTYTELL PQLLQRNLVQ RLPYSKPFAK AKPWYNPNAH CDYYSGTKGH FTEDCIRLKY
AVQELVRDVT TVITTKVTKL TTPFNTIQWN TQKATWTGQA RERESIDPIP YTYTEMLPQL
LQQRLLERLP YAQPLPLNRR PRWYNADARY DYHSGTEGHT IEDCLKLKYA VQELVRNGKL
SFGKTAQADQ TQEQSDNQVS MVGSGEVLRK KTIRGRDTFW LHIQVAPFLL LLPALVVVPP
QPFPYELGGI HINNGSALNI MTLNTLRDLP VKPAFIQVGH RKIRTPDEEM REVIGEVEIC
MEIGSTLFSL LFQVGDMEAP YTCLLGRPWV HSAQEATKVT PTKSQEGVII SETGTQSYGH
PFQVNKASHA EEMKKDVTRC WMEGQSLGKD SQDKTEIVGD LTISPGFGLG FKPIAKDHQM
LDDARKMMKA ERLDILRLSQ TFRSAGWVSG ESQPGQKEEA VIQKKVGLTI NAITKEGART
SSWIYPLAAG EGAPREVKIG ITLSEEDRQE LIDLLKEFSD VFAWSYQDMP AKYPEWQANI
VPVPKKDGKV RMCVDYRDLN KASSKDNFPL RHIDILVDNT VGYSWFSFMD GFSGYNQIKM
APEDMEKTAF VTAWRVFCYK VMPFGLKNAG ATYQRAMVAL FHDMMHKEIE VYVDDMIAKA
RMPKEHNENL RKLFERLRKV QLKLNPNKCT FGATSGKLLG FVVSEKGIEV DPDKIQAIQG
LLPHKLKKKS TSIGPTNKGK AFNFENSMGC VLAQQHDTDP IKYVFEKPGL SGWIARWQVL
LSEYYIVYVS QKTIKGSVIA DFRADRTREE YEPMNFEFPD ENLIPHVKKV EKTEEKWIVY
FDGDSNLSGQ GIGAVLVSPE EYYYPATARL KFPTTNNVAE YEACVLGIQL ALERKVKRVE
IYGDSALVIY QMKGEWQARD SKLVLYKDHV SEMIKSFEEV TFHHLPSEDN QMADVLETMA
SMFKIGAKTE IQPIYVQTRN LPAHVMSVED KADGNPWYFD ILQYLKKQIN SEHATEVDKR
TLKRMAAGYF LSGETLYKNG WDGTLMRCVD SAEARKILEE IHGGSYGSHA NGHRMARQII
REDVIGMITP KASNGHQFIL MAIDYFTKWV EAASYPSVTQ VVVARFINKE IICRPKMNGA
VEAANKNIKK ILEKMIVTYR DWHEKLPFAL HTYQTCVRTS TEATPYSLVY GMEAVVPIER
LRSEGTIKEE HEGIEAEPLK QQLEIVRQST EMLEGLQNRY LNDLEVQQMT TMPGGLIYHR
EEPSIPMQVA NDSNSAESSQ MGVKRGEQTR QKTREELEFE LNLQMEQQNL KMVESQIILN
PSARENASST NQCTNQESQS STLLLRPGIL VNATSPGFIC TINEEDTVSA FLKDTLSQRP
PGGGIKVKDT EFGQNQTRGD QIKLISVILR KKPQPYLVAF TSLRRLKVAP SLPLPCRSSK
PLPMKPEIYH TCKSVYESEY ALHLSLSTET GPLEEEKDKP HDGPLVEEDI EREAEKHSAK
RKRMEDEFAE TELAEKTNVK QRMKDIEKED RLKDDNIELP TVGSRLAVPQ QQPRAP
//
