ID A0A1R3HHB1_COCAP Unreviewed; 1135 AA.
AC A0A1R3HHB1;
DT 12-APR-2017, integrated into UniProtKB/TrEMBL.
DT 12-APR-2017, sequence version 1.
DT 27-MAR-2024, entry version 30.
DE RecName: Full=RRM domain-containing protein {ECO:0000259|PROSITE:PS50102};
GN ORFNames=CCACVL1_19357 {ECO:0000313|EMBL:OMO69668.1};
OS Corchorus capsularis (Jute).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus.
OX NCBI_TaxID=210143 {ECO:0000313|EMBL:OMO69668.1, ECO:0000313|Proteomes:UP000188268};
RN [1] {ECO:0000313|EMBL:OMO69668.1, ECO:0000313|Proteomes:UP000188268}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. CVL-1 {ECO:0000313|Proteomes:UP000188268};
RC TISSUE=Whole seedling {ECO:0000313|EMBL:OMO69668.1};
RA Alam M., Haque M.S., Islam M.S., Emdad E.M., Islam M.M., Ahmed B.,
RA Halim A., Hossen Q.M.M., Hossain M.Z., Ahmed R., Khan M.M., Islam R.,
RA Rashid M.M., Khan S.A., Rahman M.S., Alam M.;
RT "Corchorus capsularis genome sequencing.";
RL Submitted (SEP-2013) to the EMBL/GenBank/DDBJ databases.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:OMO69668.1}.
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DR EMBL; AWWV01011981; OMO69668.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A1R3HHB1; -.
DR STRING; 210143.A0A1R3HHB1; -.
DR EnsemblPlants; OMO69668; OMO69668; CCACVL1_19357.
DR Gramene; OMO69668; OMO69668; CCACVL1_19357.
DR OMA; ACHTNIR; -.
DR OrthoDB; 3184171at2759; -.
DR Proteomes; UP000188268; Unassembled WGS sequence.
DR GO; GO:0003755; F:peptidyl-prolyl cis-trans isomerase activity; IEA:UniProtKB-KW.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR CDD; cd00590; RRM_SF; 2.
DR Gene3D; 3.30.70.330; -; 3.
DR Gene3D; 2.40.100.10; Cyclophilin-like; 1.
DR Gene3D; 3.50.4.10; Hepatocyte Growth Factor; 1.
DR InterPro; IPR029000; Cyclophilin-like_dom_sf.
DR InterPro; IPR002130; Cyclophilin-type_PPIase_dom.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR000504; RRM_dom.
DR PANTHER; PTHR21245; HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN; 1.
DR PANTHER; PTHR21245:SF9; OS04G0543200 PROTEIN; 1.
DR Pfam; PF00160; Pro_isomerase; 1.
DR Pfam; PF00076; RRM_1; 3.
DR SMART; SM00360; RRM; 3.
DR SUPFAM; SSF50891; Cyclophilin-like; 1.
DR SUPFAM; SSF54928; RNA-binding domain, RBD; 2.
DR PROSITE; PS50102; RRM; 3.
PE 4: Predicted;
KW Isomerase {ECO:0000256|ARBA:ARBA00023235};
KW Reference proteome {ECO:0000313|Proteomes:UP000188268};
KW RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00176};
KW Rotamase {ECO:0000256|ARBA:ARBA00023110}.
FT DOMAIN 221..299
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT DOMAIN 301..385
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT DOMAIN 398..480
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT REGION 1..211
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 461..685
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 19..35
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 43..64
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 74..90
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 120..194
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 195..211
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 551..574
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 577..591
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 614..629
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 650..664
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1135 AA; 127729 MW; 8537547488C88DD7 CRC64;
MPPRSVKRGA ASAGPRRTAR STRGASKSQN QSLEPVEEPV KAGDVPAPRE EDFIALRNVP
APREEEEEEV VEDGKADEKP IAEDKGFVAV EDTGIDLNSN GLVTTKKENE SKESVEEYEK
DERLELDDNE YEPEEYSGVD YDEKEMDPDE VGVEEDPEEQ DPEQKEGDLS DDEDVQEVEV
EGEEEDDEHA GEEVEHADLD DAVEHEERHD VVRERRKRKE FEVFVGGLDK DATEDDIRKV
FSQIGEVVEV RLMMNPQTKK NKGFAFLRFA TIEQARRAFT ELKNPVINGK QCGVTPSQDS
DTLFLGNICK TWTKEALKEK LKHYGVDNVE DLTLVEDTNN EGMNRGFAFL EFASRSEAMD
AFKRLQRRDV LFGVDRPAKV SFADSFIDPG DEIMAQVTTI FIDCLPPSWD EDRVRELLKK
YGEIEKIELA RNMPSADRKD YGFVTFDTHD AAVTCAKSIN NTEIGDGDSK AKVRARLSRP
HQRGRGKHIG RDSYRSGRGS GRVVRGSWSN STPRGYPPRG VRGITSRVPP PSLKRPVGLR
DRRPIMSAPS RSRPLAPPPR SYDRRAPPVP PYPKSSLKRE YSRHEELPPP RSRAPVDYGS
RVIPERRPSY REEYSSRSSG YSDLPRNTSR TAARRPYVDD AYGQRFERPP PSYREARARD
YDSMSGSKRP YSAMDDVPPR YADASARHSR ARLDYELSAS APPYGDAYGD RLGRSSLGYG
GRSSMSSQDS HGLYGSRQGM GYGGGSYSGS DVGGMYSSSG YGGDYLPRGS DVGGSSYSSM
YSSRVDRSMP SATASLCCRK KDLRLKYYVK EAVCWVKLFL VIFSCWMAYL SFSVAFKRNS
DTISFSSSER LRSDEEEKQD ESGCCRGIEH LELWGDAVKW GSEFKVNSSE ECCKACKEMC
NGDDGPCLCD SWVFCGNREA CGSRFGECWL KKQKDALNPD RRDSGDRVIW TSGLIFGKGE
GIVMLKTEYG FLHVKLLPDC APRSVAYILE LLPLHHCAGC QFYRAESRGN SWDPLGNHIE
HATFGPPFAL IQGTLEAHGI QFEEIPVEAC HTNIRRGSVA WVGSGPEFFI SLANHNEWRK
TYTVFGYVLP EDMEILEKIV ELPTIPEVWS NINVSVLERP IPLRFLRMKE KVLEK
//
