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Database: UniProt
Entry: A0A1R3HKI1_COCAP
LinkDB: A0A1R3HKI1_COCAP
Original site: A0A1R3HKI1_COCAP 
ID   A0A1R3HKI1_COCAP        Unreviewed;      1084 AA.
AC   A0A1R3HKI1;
DT   12-APR-2017, integrated into UniProtKB/TrEMBL.
DT   12-APR-2017, sequence version 1.
DT   24-JAN-2024, entry version 25.
DE   SubName: Full=RNA methyltransferase family protein {ECO:0000313|EMBL:OMO70899.1};
GN   ORFNames=CCACVL1_18586 {ECO:0000313|EMBL:OMO70899.1};
OS   Corchorus capsularis (Jute).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus.
OX   NCBI_TaxID=210143 {ECO:0000313|EMBL:OMO70899.1, ECO:0000313|Proteomes:UP000188268};
RN   [1] {ECO:0000313|EMBL:OMO70899.1, ECO:0000313|Proteomes:UP000188268}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. CVL-1 {ECO:0000313|Proteomes:UP000188268};
RC   TISSUE=Whole seedling {ECO:0000313|EMBL:OMO70899.1};
RA   Alam M., Haque M.S., Islam M.S., Emdad E.M., Islam M.M., Ahmed B.,
RA   Halim A., Hossen Q.M.M., Hossain M.Z., Ahmed R., Khan M.M., Islam R.,
RA   Rashid M.M., Khan S.A., Rahman M.S., Alam M.;
RT   "Corchorus capsularis genome sequencing.";
RL   Submitted (SEP-2013) to the EMBL/GenBank/DDBJ databases.
CC   -!- SIMILARITY: Belongs to the class I-like SAM-binding methyltransferase
CC       superfamily. RNA M5U methyltransferase family. {ECO:0000256|PROSITE-
CC       ProRule:PRU01024}.
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:OMO70899.1}.
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DR   EMBL; AWWV01011753; OMO70899.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A1R3HKI1; -.
DR   STRING; 210143.A0A1R3HKI1; -.
DR   EnsemblPlants; OMO70899; OMO70899; CCACVL1_18586.
DR   Gramene; OMO70899; OMO70899; CCACVL1_18586.
DR   OrthoDB; 120922at2759; -.
DR   Proteomes; UP000188268; Unassembled WGS sequence.
DR   GO; GO:0008173; F:RNA methyltransferase activity; IEA:InterPro.
DR   GO; GO:0008757; F:S-adenosylmethionine-dependent methyltransferase activity; IEA:InterPro.
DR   GO; GO:0001510; P:RNA methylation; IEA:GOC.
DR   GO; GO:0006396; P:RNA processing; IEA:InterPro.
DR   CDD; cd02440; AdoMet_MTases; 1.
DR   Gene3D; 2.40.50.1070; -; 1.
DR   Gene3D; 2.40.50.140; Nucleic acid-binding proteins; 1.
DR   Gene3D; 3.90.1320.10; Outer-capsid protein sigma 3, large lobe; 1.
DR   Gene3D; 3.40.50.150; Vaccinia Virus protein VP39; 1.
DR   InterPro; IPR012340; NA-bd_OB-fold.
DR   InterPro; IPR004314; Neprosin.
DR   InterPro; IPR029063; SAM-dependent_MTases_sf.
DR   InterPro; IPR010280; U5_MeTrfase_fam.
DR   NCBIfam; TIGR00479; rumA; 1.
DR   PANTHER; PTHR11061; RNA M5U METHYLTRANSFERASE; 1.
DR   PANTHER; PTHR11061:SF30; TRNA (URACIL(54)-C(5))-METHYLTRANSFERASE; 1.
DR   Pfam; PF03080; Neprosin; 2.
DR   Pfam; PF05958; tRNA_U5-meth_tr; 1.
DR   SUPFAM; SSF50249; Nucleic acid-binding proteins; 1.
DR   SUPFAM; SSF53335; S-adenosyl-L-methionine-dependent methyltransferases; 1.
DR   PROSITE; PS51687; SAM_MT_RNA_M5U; 1.
PE   3: Inferred from homology;
KW   Methyltransferase {ECO:0000256|ARBA:ARBA00022603, ECO:0000256|PROSITE-
KW   ProRule:PRU01024}; Reference proteome {ECO:0000313|Proteomes:UP000188268};
KW   S-adenosyl-L-methionine {ECO:0000256|ARBA:ARBA00022691,
KW   ECO:0000256|PROSITE-ProRule:PRU01024};
KW   Transferase {ECO:0000256|ARBA:ARBA00022679, ECO:0000256|PROSITE-
KW   ProRule:PRU01024}.
FT   DOMAIN          605..784
FT                   /note="Neprosin"
FT                   /evidence="ECO:0000259|Pfam:PF03080"
FT   DOMAIN          872..1077
FT                   /note="Neprosin"
FT                   /evidence="ECO:0000259|Pfam:PF03080"
FT   REGION          34..60
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        37..51
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   ACT_SITE        500
FT                   /note="Nucleophile"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU01024"
FT   BINDING         373
FT                   /ligand="S-adenosyl-L-methionine"
FT                   /ligand_id="ChEBI:CHEBI:59789"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU01024"
FT   BINDING         404
FT                   /ligand="S-adenosyl-L-methionine"
FT                   /ligand_id="ChEBI:CHEBI:59789"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU01024"
FT   BINDING         425
FT                   /ligand="S-adenosyl-L-methionine"
FT                   /ligand_id="ChEBI:CHEBI:59789"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU01024"
FT   BINDING         473
FT                   /ligand="S-adenosyl-L-methionine"
FT                   /ligand_id="ChEBI:CHEBI:59789"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU01024"
SQ   SEQUENCE   1084 AA;  120408 MW;  12E75BE3CB0D8D91 CRC64;
     MATAIPSHAL RHLTVTRPWL RRIRCNASLA LSRQDPHETL PENDSNDNVE IKKPKSSNSQ
     AFFPKKNQVL ELECESLAFK GKGVCKAADS GFVLLCDRAL PGERFIGRVT RKKGSYAEVT
     KLKTISPHWD FVDAPCEYAS YCGGCKTQNL SYEAQIRAKE QQVRELVINV GKFSDKNSEF
     SSLMKPIVPC NVQFHYRNKM EFSFGSQKWL PKELLHEKLD GNENYALGLH APGFFDKILN
     VEKCLLQSEP ANKVLETVQD HWKDPELGLS PYNVHSHAGF LKHFVLRTGR DMKTGLPELM
     VNFVTSSYKP ELLKPLVEKI SAIPEVVSIM NNVNTSVGNT SVGEEEYTLY GKSTITESLR
     GLTFQISANS FFQTNTGQAE VLYKLIEDCA GLRGDGSEVV LDLFCGTGTI GLTLAKMARH
     VYGYEVVAQA VADAHRNAKL NGISNATFVQ GDLNKIGEDF GKNFPKPDIV ITDPNRPGMH
     MKLIKFLLKL KAPKIVYVSC NPATCARDLD YLCHGVMKPS SYPKGMQVGK FDPKLLQGYI
     KCPEGTVPIV RAPINNSTEA NFSHRKYQIK VMAPFHEYAL VSIKNGNYFG ASARLNVWHP
     ATFNGELSVA QFWITAGQGT EVNTIEAGWI SNAGDTKTRL FIFWTTDNYR TTGCYNLMCP
     GFVQTSNHRL LGTIMNPVSI YGGQQFDILL IVHKDKQSGN WWLRFQDIDL GYWPSSIFTK
     LSDRAAEVLW GGEIVNTGGG GRHTTTEMGN GHFPSEGFKF SAFMKNLAYV DESGNFADAG
     NIMKPSSYPK GMKVEKFDPN LLQGYIKCPQ GTVPIVRAPI NNSTKANFSH RKYQTQAISG
     ALVHEYAQVS AIGNYYGASA RLNVWHPATF NGEFSLAQFW VLGGQGAELN SMEAGWIAIR
     KQDFSHFGLT ITMETPVAMI LSPGFVQTSN HRLLGTVIKP ISTYGGKQFD IFLIIHKDKQ
     SGNWWLRVQD IDLGYWPSSI FTKFSDSAGV ISWGGEITNS AVKGGRHTIT EMGSGHFPSE
     GFKFAAYIGN LAYIDHESGD FVDAKDLVPF VTNAKCYDVK IPKKNKVWGT HIYLGGPGWN
     DECP
//
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