ID A0A1R3HYX4_9ROSI Unreviewed; 997 AA.
AC A0A1R3HYX4;
DT 12-APR-2017, integrated into UniProtKB/TrEMBL.
DT 12-APR-2017, sequence version 1.
DT 27-MAR-2024, entry version 34.
DE RecName: Full=tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 {ECO:0000256|ARBA:ARBA00021704};
DE AltName: Full=tRNA(m1A58)-methyltransferase subunit TRM6 {ECO:0000256|ARBA:ARBA00032319};
GN ORFNames=COLO4_26158 {ECO:0000313|EMBL:OMO75411.1};
OS Corchorus olitorius.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus.
OX NCBI_TaxID=93759 {ECO:0000313|EMBL:OMO75411.1, ECO:0000313|Proteomes:UP000187203};
RN [1] {ECO:0000313|Proteomes:UP000187203}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. O-4 {ECO:0000313|Proteomes:UP000187203};
RA Alam M., Haque M.S., Islam M.S., Emdad E.M., Islam M.M., Ahmed B.,
RA Halim A., Hossen Q.M.M., Hossain M.Z., Ahmed R., Khan M.M., Islam R.,
RA Rashid M.M., Khan S.A., Rahman M.S., Alam M., Yahiya A.S., Khan M.S.,
RA Azam M.S., Haque T., Lashkar M.Z.H., Akhand A.I., Morshed G., Roy S.,
RA Uddin K.S., Rabeya T., Hossain A.S., Chowdhury A., Snigdha A.R.,
RA Mortoza M.S., Matin S.A., Hoque S.M.E., Islam M.K., Roy D.K., Haider R.,
RA Moosa M.M., Elias S.M., Hasan A.M., Jahan S., Shafiuddin M., Mahmood N.,
RA Shommy N.S.;
RT "Corchorus olitorius genome sequencing.";
RL Submitted (SEP-2013) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123,
CC ECO:0000256|RuleBase:RU003796}.
CC -!- SIMILARITY: Belongs to the E2F/DP family.
CC {ECO:0000256|RuleBase:RU003796}.
CC -!- SIMILARITY: Belongs to the TRM6/GCD10 family.
CC {ECO:0000256|ARBA:ARBA00008320}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:OMO75411.1}.
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DR EMBL; AWUE01019210; OMO75411.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A1R3HYX4; -.
DR STRING; 93759.A0A1R3HYX4; -.
DR OrthoDB; 22535at2759; -.
DR Proteomes; UP000187203; Unassembled WGS sequence.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0005667; C:transcription regulator complex; IEA:InterPro.
DR GO; GO:0031515; C:tRNA (m1A) methyltransferase complex; IEA:InterPro.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR GO; GO:0007049; P:cell cycle; IEA:UniProtKB-KW.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR GO; GO:0030488; P:tRNA methylation; IEA:InterPro.
DR CDD; cd14660; E2F_DD; 1.
DR Gene3D; 6.10.250.540; -; 1.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 1.
DR InterPro; IPR037241; E2F-DP_heterodim.
DR InterPro; IPR032198; E2F_CC-MB.
DR InterPro; IPR003316; E2F_WHTH_DNA-bd_dom.
DR InterPro; IPR024752; Myb/SANT-like_dom.
DR InterPro; IPR017423; TRM6.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR InterPro; IPR036390; WH_DNA-bd_sf.
DR PANTHER; PTHR12945; TRANSLATION INITIATION FACTOR EIF3-RELATED; 1.
DR PANTHER; PTHR12945:SF0; TRNA (ADENINE(58)-N(1))-METHYLTRANSFERASE NON-CATALYTIC SUBUNIT TRM6; 1.
DR Pfam; PF16421; E2F_CC-MB; 1.
DR Pfam; PF02319; E2F_TDP; 1.
DR Pfam; PF04189; Gcd10p; 1.
DR Pfam; PF12776; Myb_DNA-bind_3; 1.
DR SMART; SM01372; E2F_TDP; 1.
DR SUPFAM; SSF144074; E2F-DP heterodimerization region; 1.
DR SUPFAM; SSF46785; Winged helix' DNA-binding domain; 1.
PE 3: Inferred from homology;
KW Cell cycle {ECO:0000256|ARBA:ARBA00023306};
KW DNA-binding {ECO:0000256|RuleBase:RU003796};
KW Nucleus {ECO:0000256|RuleBase:RU003796};
KW Reference proteome {ECO:0000313|Proteomes:UP000187203};
KW Transcription {ECO:0000256|RuleBase:RU003796};
KW Transcription regulation {ECO:0000256|RuleBase:RU003796}.
FT DOMAIN 478..543
FT /note="E2F/DP family winged-helix DNA-binding"
FT /evidence="ECO:0000259|SMART:SM01372"
FT REGION 75..106
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 398..476
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 889..950
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 87..101
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 398..420
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 461..476
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 893..921
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 922..950
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 997 AA; 111169 MW; A0ED9C45E9C2BCD3 CRC64;
MSESKPQLGP VQNPRVTWEG CSVLLDINDG DRLVFARLSA GSTLKIGNKT CSLQPLIGCP
FGSMFQVESG QEKPYLSRFT PSTEENNVQD EGKEESRDNR ALIDNNQAQS LTSEDIDALR
RQGATGNEIV EALIANSTTF DKKTQFSQEK YRIKKQKKYA PRVLLRRPFS RSICEAYFKK
YPARIGFLRV DALSLLLSMA NVTANSDVLV VDFVGGLLTG AVAERLGGTG SVCNTYLGGK
PHSMEIIRMF NFTNEICKRV LRCSLDDLCS VQSGTDEKAD QQENVRTVEI RSNEQTSVSV
SMEEVDLSTD NGVGDLLPEN DLSTVSKTCK APKAGDKASK ESMKSWRENG FSSLIIAAPE
QDPWSLVKQL LPLLSYSAPF AIYHQYLQSN SSLDSAHSAF ATPPLNQTRE GKSVEAQSSG
RQDVPGHGKV INHPLPGPEH EKGGKHNSKA KGKKNSKSGT QKLDADSPNG LNTTGNCRYD
SSLGLLTKKF VNLIMEAKDG TLDLNHTAEV LEVQKRRIYD ITNVLEGIGL IEKTSKNHIR
WKGSDDKASM ELDDQVTRLK AEVQRLYAEE CKLDNHIRER QESLRALDED ANKQQYLFMT
EEDIMNLPCF QNQTVISIEA PQASYIEVPD PDEDIGFQQR QYKMIIRSHN GPIILHLLSQ
YQDRVNGLSG VQPPELCSDD KASQMNSSKT ELTPSMGAVD DDYWFHSEPG VSMTDLVYEE
LLTISSHFIH IFFKQYQSGF PENCGVRVPL ADKYNHMHWP GKSIVINSRP NNVFDKKTWN
NIRDEFNKQT ELNFNNNQLR KHLDVLRTRF YNLKSAYDQN DFAGMEDSCC IGFDLWEDIG
AQPRPEPVKV KDCPIYEQLC AIFTDSSADG KYAQSSHFEG LDKAIGNDNG GLNSCPEGGS
AQPDNSSASR LPQNNSLPEK LTKTTGERKR KRPSEAQSSL DQSRKDEETS EAMAGAMFAL
DLFEDSNLRE TFICLKGGTT RLTWLQGKCV SPALTSF
//
