ID A0A1R3I7Y8_COCAP Unreviewed; 360 AA.
AC A0A1R3I7Y8;
DT 12-APR-2017, integrated into UniProtKB/TrEMBL.
DT 12-APR-2017, sequence version 1.
DT 27-MAR-2024, entry version 26.
DE SubName: Full=XPG/Rad2 endonuclease {ECO:0000313|EMBL:OMO78702.1};
DE Flags: Fragment;
GN ORFNames=CCACVL1_14204 {ECO:0000313|EMBL:OMO78702.1};
OS Corchorus capsularis (Jute).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus.
OX NCBI_TaxID=210143 {ECO:0000313|EMBL:OMO78702.1, ECO:0000313|Proteomes:UP000188268};
RN [1] {ECO:0000313|EMBL:OMO78702.1, ECO:0000313|Proteomes:UP000188268}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. CVL-1 {ECO:0000313|Proteomes:UP000188268};
RC TISSUE=Whole seedling {ECO:0000313|EMBL:OMO78702.1};
RA Alam M., Haque M.S., Islam M.S., Emdad E.M., Islam M.M., Ahmed B.,
RA Halim A., Hossen Q.M.M., Hossain M.Z., Ahmed R., Khan M.M., Islam R.,
RA Rashid M.M., Khan S.A., Rahman M.S., Alam M.;
RT "Corchorus capsularis genome sequencing.";
RL Submitted (SEP-2013) to the EMBL/GenBank/DDBJ databases.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:OMO78702.1}.
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DR EMBL; AWWV01010527; OMO78702.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A1R3I7Y8; -.
DR STRING; 210143.A0A1R3I7Y8; -.
DR EnsemblPlants; OMO78702; OMO78702; CCACVL1_14204.
DR Gramene; OMO78702; OMO78702; CCACVL1_14204.
DR OMA; CPWHENE; -.
DR OrthoDB; 26655at2759; -.
DR Proteomes; UP000188268; Unassembled WGS sequence.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR GO; GO:0004520; F:DNA endonuclease activity; IEA:UniProt.
DR Gene3D; 1.10.150.20; 5' to 3' exonuclease, C-terminal subdomain; 1.
DR Gene3D; 3.40.50.1010; 5'-nuclease; 2.
DR InterPro; IPR036279; 5-3_exonuclease_C_sf.
DR InterPro; IPR029060; PIN-like_dom_sf.
DR InterPro; IPR006086; XPG-I_dom.
DR InterPro; IPR006084; XPG/Rad2.
DR InterPro; IPR006085; XPG_DNA_repair_N.
DR PANTHER; PTHR11081; FLAP ENDONUCLEASE FAMILY MEMBER; 1.
DR PANTHER; PTHR11081:SF59; FLAP ENDONUCLEASE GEN-LIKE 1; 1.
DR Pfam; PF00867; XPG_I; 1.
DR SMART; SM00484; XPGI; 1.
DR SMART; SM00485; XPGN; 1.
DR SUPFAM; SSF47807; 5' to 3' exonuclease, C-terminal subdomain; 1.
DR SUPFAM; SSF88723; PIN domain-like; 1.
PE 4: Predicted;
KW Endonuclease {ECO:0000313|EMBL:OMO78702.1};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Membrane {ECO:0000256|SAM:Phobius};
KW Nuclease {ECO:0000256|ARBA:ARBA00022722};
KW Reference proteome {ECO:0000313|Proteomes:UP000188268};
KW Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT TRANSMEM 306..323
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 343..359
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 1..91
FT /note="XPG N-terminal"
FT /evidence="ECO:0000259|SMART:SM00485"
FT DOMAIN 69..139
FT /note="XPG-I"
FT /evidence="ECO:0000259|SMART:SM00484"
FT NON_TER 360
FT /evidence="ECO:0000313|EMBL:OMO78702.1"
SQ SEQUENCE 360 AA; 40679 MW; DEFCED8E132BDDCB CRC64;
MGVGGNFWEL LKPYARQEGF DFLRDKRVAV DLSYWIVQHE TAIKNQATNP HLRLTFFRTI
NLISKELLEL MGMPVLKAKG EAEALCAQLN KDGYVDACIT ADSDAFLFGA TCVIKCLRPN
SKEPIECYRM SDIEAGLGLK RKHLIAISLL VVNDHDLKGV QGIGLDKALR FVRKFSEDEI
LDKLCQIGKG DLPLFQDGII CVGDVTPCLD DCSTKPKQSH CSFRGHPGSK KSHLKLSCEY
CLTDGNVGCL KKSPNFKCNC SSCDKVRKEK DQKKHDNWWI KVCNKITMEP NFPNDEIIEM
YMCNNHAMLT GWSCIFSHIL IFVFKSKALT LQFLVRALKG IRFSLYALIL LFCSFDIVLC
//
