ID A0A1R3IES3_9ROSI Unreviewed; 1191 AA.
AC A0A1R3IES3;
DT 12-APR-2017, integrated into UniProtKB/TrEMBL.
DT 12-APR-2017, sequence version 1.
DT 24-JAN-2024, entry version 23.
DE SubName: Full=MIF4G-like, type 3 {ECO:0000313|EMBL:OMO81089.1};
GN ORFNames=COLO4_23765 {ECO:0000313|EMBL:OMO81089.1};
OS Corchorus olitorius.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus.
OX NCBI_TaxID=93759 {ECO:0000313|EMBL:OMO81089.1, ECO:0000313|Proteomes:UP000187203};
RN [1] {ECO:0000313|Proteomes:UP000187203}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. O-4 {ECO:0000313|Proteomes:UP000187203};
RA Alam M., Haque M.S., Islam M.S., Emdad E.M., Islam M.M., Ahmed B.,
RA Halim A., Hossen Q.M.M., Hossain M.Z., Ahmed R., Khan M.M., Islam R.,
RA Rashid M.M., Khan S.A., Rahman M.S., Alam M., Yahiya A.S., Khan M.S.,
RA Azam M.S., Haque T., Lashkar M.Z.H., Akhand A.I., Morshed G., Roy S.,
RA Uddin K.S., Rabeya T., Hossain A.S., Chowdhury A., Snigdha A.R.,
RA Mortoza M.S., Matin S.A., Hoque S.M.E., Islam M.K., Roy D.K., Haider R.,
RA Moosa M.M., Elias S.M., Hasan A.M., Jahan S., Shafiuddin M., Mahmood N.,
RA Shommy N.S.;
RT "Corchorus olitorius genome sequencing.";
RL Submitted (SEP-2013) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|ARBA:ARBA00004496}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:OMO81089.1}.
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DR EMBL; AWUE01018346; OMO81089.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A1R3IES3; -.
DR STRING; 93759.A0A1R3IES3; -.
DR OrthoDB; 276824at2759; -.
DR Proteomes; UP000187203; Unassembled WGS sequence.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR GO; GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IEA:InterPro.
DR Gene3D; 1.25.40.180; -; 3.
DR InterPro; IPR016024; ARM-type_fold.
DR InterPro; IPR003890; MIF4G-like_typ-3.
DR InterPro; IPR039762; Nmd2/UPF2.
DR InterPro; IPR007193; Upf2/Nmd2_C.
DR PANTHER; PTHR12839; NONSENSE-MEDIATED MRNA DECAY PROTEIN 2 UP-FRAMESHIFT SUPPRESSOR 2; 1.
DR PANTHER; PTHR12839:SF7; REGULATOR OF NONSENSE TRANSCRIPTS 2; 1.
DR Pfam; PF02854; MIF4G; 3.
DR Pfam; PF04050; Upf2; 1.
DR SMART; SM00543; MIF4G; 3.
DR SUPFAM; SSF48371; ARM repeat; 3.
PE 4: Predicted;
KW Cytoplasm {ECO:0000256|ARBA:ARBA00022490};
KW Reference proteome {ECO:0000313|Proteomes:UP000187203}.
FT DOMAIN 60..282
FT /note="MIF4G"
FT /evidence="ECO:0000259|SMART:SM00543"
FT DOMAIN 476..664
FT /note="MIF4G"
FT /evidence="ECO:0000259|SMART:SM00543"
FT DOMAIN 679..880
FT /note="MIF4G"
FT /evidence="ECO:0000259|SMART:SM00543"
FT REGION 1..20
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 314..350
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 379..468
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 899..1013
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1051..1077
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1136..1191
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 324..344
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 384..422
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 424..468
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 899..921
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 922..941
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 968..997
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 998..1013
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1053..1077
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1138..1169
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1172..1191
FT /note="Basic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1191 AA; 135133 MW; C3AA2E1E7A02E046 CRC64;
MDHHEDECRG EQHSKQDDEE AVARLEEIKK SIESKLSLRQ SNLNPERPDS GFLRTLDSSI
KRNTAVIKKL KQINEELKEG LMEELRSVNL SKFVSEAVTA ICDAKLKSSD IPAAVQICSL
LHQRYKDFSP SLVQGLLKVF FPGKSGDDVD ADRNLKAMKK RSTLKLLLEL YFVGVIEDNG
IFINIIKDLT STEHMKDRDA TQTNLTLLAS FARQGRVFLG LPVSGQEMQE EFFKGLNITA
DQKKIFRKAF HAYYDAVTEL LQSEHASLRQ MEHENAKILN AKGELNEENA SSYEKLRKSY
DHLYRNVSSL AEALDMQPPV MPEDSHTTRV TTGEDASPPA TGKESSTLEA IWDDEDTKAF
YESLPDLRSF VPAVLLGEAE PKANEQTSKV QEQQTESSTE ADQSTAVVQD AVEASADSGN
LQEGKSIEKG KDKEDKDKEK TKEPDKEKGK EKEKDSDKKG ENEKEKLKGL EGSSLDALLQ
RLPGCVSRDL IDHLTVEFCY LNSKSNRKRL VRALFNVPRT SLELLPYYSR MVATLSTCMK
DVPSMLLQML EEEFNFLINK KDQMNIETKI RNIRFIGELC KFKIAPAGLV FSCLKTCLDD
FTHHNIDVAC NLLETCGRFL YRSPETTIRM ANMLEILMRL KNVKNLDPRH STLVENAYYL
CKPPERSARV SKVRPPLHQY IRKLLFTDLD KSSIEHVLRQ LRKLPWSECE SYLLKCFMKV
HKGKYGQIHL IASLTAGLSR YHDEFAVAVV DEVLEEIRLG LELNDYGMQQ RRIAHMRFLG
ELYNYEHVDS SVIFETLYLI LVFGHDTAEQ DVLDPPEDCF RIRMVITLLQ TCGHYFGRGS
SKRKLDRFLI HFQRYILSKG TLPLDIEFDL QDLFAELRPN MTRYSSMEEV NAALVELEEH
ESTAATDKTS SEKHSDTEKP SSRTTAHSIS DDRSSILNGS EENGGVHEET VEGDTDSESG
SGTIEPDGHD EDDLDEENHD GGCDTDEDDE DDVGPSDEDD EVHVRQKVAE LDPKEVANFD
QELRAESMEQ RKLELRGRPT LNMMIPMNLF EGSTKDHHGR VVGGESGDEQ LEEEAGGSRE
VQVKVLVKRG NKQQTKQMYI PRDCTLVQST KQKEAAELEE KQDIKRLVLE YNDRVEEENN
GLGTQTLNWP SGNTRVYGRG NSWEGSSGRS GGQRHRHHNH SGSGAYYGRK K
//
