ID A0A1R3IGU1_COCAP Unreviewed; 689 AA.
AC A0A1R3IGU1;
DT 12-APR-2017, integrated into UniProtKB/TrEMBL.
DT 12-APR-2017, sequence version 1.
DT 24-JAN-2024, entry version 30.
DE RecName: Full=Zinc finger, CCCH-type {ECO:0008006|Google:ProtNLM};
GN ORFNames=CCACVL1_12217 {ECO:0000313|EMBL:OMO81783.1};
OS Corchorus capsularis (Jute).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus.
OX NCBI_TaxID=210143 {ECO:0000313|EMBL:OMO81783.1, ECO:0000313|Proteomes:UP000188268};
RN [1] {ECO:0000313|EMBL:OMO81783.1, ECO:0000313|Proteomes:UP000188268}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. CVL-1 {ECO:0000313|Proteomes:UP000188268};
RC TISSUE=Whole seedling {ECO:0000313|EMBL:OMO81783.1};
RA Alam M., Haque M.S., Islam M.S., Emdad E.M., Islam M.M., Ahmed B.,
RA Halim A., Hossen Q.M.M., Hossain M.Z., Ahmed R., Khan M.M., Islam R.,
RA Rashid M.M., Khan S.A., Rahman M.S., Alam M.;
RT "Corchorus capsularis genome sequencing.";
RL Submitted (SEP-2013) to the EMBL/GenBank/DDBJ databases.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:OMO81783.1}.
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DR EMBL; AWWV01010083; OMO81783.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A1R3IGU1; -.
DR STRING; 210143.A0A1R3IGU1; -.
DR EnsemblPlants; OMO81783; OMO81783; CCACVL1_12217.
DR Gramene; OMO81783; OMO81783; CCACVL1_12217.
DR OMA; GMEPLEC; -.
DR OrthoDB; 1354311at2759; -.
DR Proteomes; UP000188268; Unassembled WGS sequence.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR CDD; cd12458; RRM_AtC3H46_like; 1.
DR Gene3D; 3.30.70.330; -; 1.
DR Gene3D; 4.10.1000.10; Zinc finger, CCCH-type; 1.
DR InterPro; IPR034365; AtC3H46-like_RRM.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR000504; RRM_dom.
DR InterPro; IPR000571; Znf_CCCH.
DR InterPro; IPR036855; Znf_CCCH_sf.
DR PANTHER; PTHR24009; RNA-BINDING (RRM/RBD/RNP MOTIFS); 1.
DR PANTHER; PTHR24009:SF11; ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22-LIKE ISOFORM X1; 1.
DR Pfam; PF00076; RRM_1; 1.
DR Pfam; PF00642; zf-CCCH; 1.
DR SMART; SM00360; RRM; 1.
DR SMART; SM00356; ZnF_C3H1; 1.
DR SUPFAM; SSF90229; CCCH zinc finger; 1.
DR SUPFAM; SSF54928; RNA-binding domain, RBD; 1.
DR PROSITE; PS50102; RRM; 1.
DR PROSITE; PS50103; ZF_C3H1; 1.
PE 4: Predicted;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723, ECO:0000256|PROSITE-
KW ProRule:PRU00723}; Reference proteome {ECO:0000313|Proteomes:UP000188268};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884, ECO:0000256|PROSITE-
KW ProRule:PRU00176};
KW Zinc {ECO:0000256|ARBA:ARBA00022833, ECO:0000256|PROSITE-ProRule:PRU00723};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00723}.
FT DOMAIN 212..239
FT /note="C3H1-type"
FT /evidence="ECO:0000259|PROSITE:PS50103"
FT DOMAIN 349..425
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT ZN_FING 212..239
FT /note="C3H1-type"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00723"
FT REGION 68..120
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 428..453
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 575..599
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 637..657
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 72..86
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 87..120
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 432..453
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 689 AA; 75041 MW; 04510E4B9B8B0906 CRC64;
MDSYEATRMV FSRIQNLDPE NASKIMGYLL IQDLGEKEMI RLAFGPEALI HSLILKAKSH
LGLSLSISNP PTPSTPSSPS PFSSRPSPLS IPSSSTPRLT ASNNGGFELP NPSSPSTNTW
PPSYASIVNG TNGNIMGNGS GSLSSIGNSN GNVENEFMDD YQFQDHLSFL NESKPEDLYD
PRLDLAMGDS PLHRRSYSVP GLCFGAEDVN SGAGWKPCLY FARGFCKNGS SCRFLHGDCA
AADGGALVGS PSKLSELEQC QELLRSKALQ QQQLQQQQKL AAASQFMAGT SLPYSKCVNY
LLQQQNDSPR SAAAALMMGD ELHKFGRCRS ERNDFSAMGL GGSINPGSRQ IYLTFPADST
FKEEDVSNYF SIYGPVQDVR IPYQQKRMFG FVTFVYPETV KLILAKGNPH FVCDSRVLVK
PYKEKGKVQE KKQQQQQQQL ERGEYSNCSS PSALDSREPF DLHLGARMFY NTQEMLLRRK
LEEQADLQQA LELQGRRLMN LQLLDFKNNH HPQFHPGLST GSPIPSPTVS HASNNPALIF
PADGIDQEVP EENGGSPVGV VISKPATANA DKQLEEVNPV SDHKNENGNS SNTNEEKANI
EDGDLPESLE HILPDNLFAS PKKSVGENLS VFSAAASSGE TDDKTASPAI SCSNNNPSLA
NTSSLNMASL KSCFLQMPRF SSGHGTVGM
//