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Database: UniProt
Entry: A0A1R3IGU1_COCAP
LinkDB: A0A1R3IGU1_COCAP
Original site: A0A1R3IGU1_COCAP 
ID   A0A1R3IGU1_COCAP        Unreviewed;       689 AA.
AC   A0A1R3IGU1;
DT   12-APR-2017, integrated into UniProtKB/TrEMBL.
DT   12-APR-2017, sequence version 1.
DT   24-JAN-2024, entry version 30.
DE   RecName: Full=Zinc finger, CCCH-type {ECO:0008006|Google:ProtNLM};
GN   ORFNames=CCACVL1_12217 {ECO:0000313|EMBL:OMO81783.1};
OS   Corchorus capsularis (Jute).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus.
OX   NCBI_TaxID=210143 {ECO:0000313|EMBL:OMO81783.1, ECO:0000313|Proteomes:UP000188268};
RN   [1] {ECO:0000313|EMBL:OMO81783.1, ECO:0000313|Proteomes:UP000188268}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. CVL-1 {ECO:0000313|Proteomes:UP000188268};
RC   TISSUE=Whole seedling {ECO:0000313|EMBL:OMO81783.1};
RA   Alam M., Haque M.S., Islam M.S., Emdad E.M., Islam M.M., Ahmed B.,
RA   Halim A., Hossen Q.M.M., Hossain M.Z., Ahmed R., Khan M.M., Islam R.,
RA   Rashid M.M., Khan S.A., Rahman M.S., Alam M.;
RT   "Corchorus capsularis genome sequencing.";
RL   Submitted (SEP-2013) to the EMBL/GenBank/DDBJ databases.
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:OMO81783.1}.
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DR   EMBL; AWWV01010083; OMO81783.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A1R3IGU1; -.
DR   STRING; 210143.A0A1R3IGU1; -.
DR   EnsemblPlants; OMO81783; OMO81783; CCACVL1_12217.
DR   Gramene; OMO81783; OMO81783; CCACVL1_12217.
DR   OMA; GMEPLEC; -.
DR   OrthoDB; 1354311at2759; -.
DR   Proteomes; UP000188268; Unassembled WGS sequence.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR   GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR   CDD; cd12458; RRM_AtC3H46_like; 1.
DR   Gene3D; 3.30.70.330; -; 1.
DR   Gene3D; 4.10.1000.10; Zinc finger, CCCH-type; 1.
DR   InterPro; IPR034365; AtC3H46-like_RRM.
DR   InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR   InterPro; IPR035979; RBD_domain_sf.
DR   InterPro; IPR000504; RRM_dom.
DR   InterPro; IPR000571; Znf_CCCH.
DR   InterPro; IPR036855; Znf_CCCH_sf.
DR   PANTHER; PTHR24009; RNA-BINDING (RRM/RBD/RNP MOTIFS); 1.
DR   PANTHER; PTHR24009:SF11; ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22-LIKE ISOFORM X1; 1.
DR   Pfam; PF00076; RRM_1; 1.
DR   Pfam; PF00642; zf-CCCH; 1.
DR   SMART; SM00360; RRM; 1.
DR   SMART; SM00356; ZnF_C3H1; 1.
DR   SUPFAM; SSF90229; CCCH zinc finger; 1.
DR   SUPFAM; SSF54928; RNA-binding domain, RBD; 1.
DR   PROSITE; PS50102; RRM; 1.
DR   PROSITE; PS50103; ZF_C3H1; 1.
PE   4: Predicted;
KW   DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW   Metal-binding {ECO:0000256|ARBA:ARBA00022723, ECO:0000256|PROSITE-
KW   ProRule:PRU00723}; Reference proteome {ECO:0000313|Proteomes:UP000188268};
KW   RNA-binding {ECO:0000256|ARBA:ARBA00022884, ECO:0000256|PROSITE-
KW   ProRule:PRU00176};
KW   Zinc {ECO:0000256|ARBA:ARBA00022833, ECO:0000256|PROSITE-ProRule:PRU00723};
KW   Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW   ProRule:PRU00723}.
FT   DOMAIN          212..239
FT                   /note="C3H1-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50103"
FT   DOMAIN          349..425
FT                   /note="RRM"
FT                   /evidence="ECO:0000259|PROSITE:PS50102"
FT   ZN_FING         212..239
FT                   /note="C3H1-type"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00723"
FT   REGION          68..120
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          428..453
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          575..599
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          637..657
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        72..86
FT                   /note="Pro residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        87..120
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        432..453
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   689 AA;  75041 MW;  04510E4B9B8B0906 CRC64;
     MDSYEATRMV FSRIQNLDPE NASKIMGYLL IQDLGEKEMI RLAFGPEALI HSLILKAKSH
     LGLSLSISNP PTPSTPSSPS PFSSRPSPLS IPSSSTPRLT ASNNGGFELP NPSSPSTNTW
     PPSYASIVNG TNGNIMGNGS GSLSSIGNSN GNVENEFMDD YQFQDHLSFL NESKPEDLYD
     PRLDLAMGDS PLHRRSYSVP GLCFGAEDVN SGAGWKPCLY FARGFCKNGS SCRFLHGDCA
     AADGGALVGS PSKLSELEQC QELLRSKALQ QQQLQQQQKL AAASQFMAGT SLPYSKCVNY
     LLQQQNDSPR SAAAALMMGD ELHKFGRCRS ERNDFSAMGL GGSINPGSRQ IYLTFPADST
     FKEEDVSNYF SIYGPVQDVR IPYQQKRMFG FVTFVYPETV KLILAKGNPH FVCDSRVLVK
     PYKEKGKVQE KKQQQQQQQL ERGEYSNCSS PSALDSREPF DLHLGARMFY NTQEMLLRRK
     LEEQADLQQA LELQGRRLMN LQLLDFKNNH HPQFHPGLST GSPIPSPTVS HASNNPALIF
     PADGIDQEVP EENGGSPVGV VISKPATANA DKQLEEVNPV SDHKNENGNS SNTNEEKANI
     EDGDLPESLE HILPDNLFAS PKKSVGENLS VFSAAASSGE TDDKTASPAI SCSNNNPSLA
     NTSSLNMASL KSCFLQMPRF SSGHGTVGM
//
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