ID A0A1R3IUT4_COCAP Unreviewed; 895 AA.
AC A0A1R3IUT4;
DT 12-APR-2017, integrated into UniProtKB/TrEMBL.
DT 12-APR-2017, sequence version 1.
DT 27-MAR-2024, entry version 24.
DE SubName: Full=Reverse transcriptase {ECO:0000313|EMBL:OMO86337.1};
GN ORFNames=CCACVL1_09629 {ECO:0000313|EMBL:OMO86337.1};
OS Corchorus capsularis (Jute).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus.
OX NCBI_TaxID=210143 {ECO:0000313|EMBL:OMO86337.1, ECO:0000313|Proteomes:UP000188268};
RN [1] {ECO:0000313|EMBL:OMO86337.1, ECO:0000313|Proteomes:UP000188268}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. CVL-1 {ECO:0000313|Proteomes:UP000188268};
RC TISSUE=Whole seedling {ECO:0000313|EMBL:OMO86337.1};
RA Alam M., Haque M.S., Islam M.S., Emdad E.M., Islam M.M., Ahmed B.,
RA Halim A., Hossen Q.M.M., Hossain M.Z., Ahmed R., Khan M.M., Islam R.,
RA Rashid M.M., Khan S.A., Rahman M.S., Alam M.;
RT "Corchorus capsularis genome sequencing.";
RL Submitted (SEP-2013) to the EMBL/GenBank/DDBJ databases.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:OMO86337.1}.
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DR EMBL; AWWV01009480; OMO86337.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A1R3IUT4; -.
DR STRING; 210143.A0A1R3IUT4; -.
DR EnsemblPlants; OMO86337; OMO86337; CCACVL1_09629.
DR Gramene; OMO86337; OMO86337; CCACVL1_09629.
DR OMA; CHERYLR; -.
DR OrthoDB; 1128803at2759; -.
DR Proteomes; UP000188268; Unassembled WGS sequence.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0003964; F:RNA-directed DNA polymerase activity; IEA:UniProtKB-KW.
DR GO; GO:0004523; F:RNA-DNA hybrid ribonuclease activity; IEA:InterPro.
DR CDD; cd06222; RNase_H_like; 1.
DR CDD; cd01650; RT_nLTR_like; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR InterPro; IPR043502; DNA/RNA_pol_sf.
DR InterPro; IPR044730; RNase_H-like_dom_plant.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR002156; RNaseH_domain.
DR InterPro; IPR036397; RNaseH_sf.
DR InterPro; IPR000477; RT_dom.
DR InterPro; IPR026960; RVT-Znf.
DR PANTHER; PTHR46890; NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED; 1.
DR PANTHER; PTHR46890:SF45; RNA BINDING _ RNA-DIRECTED DNA POLYMERASE; 1.
DR Pfam; PF00078; RVT_1; 1.
DR Pfam; PF13456; RVT_3; 1.
DR Pfam; PF13966; zf-RVT; 1.
DR SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR PROSITE; PS50878; RT_POL; 1.
PE 4: Predicted;
KW Nucleotidyltransferase {ECO:0000313|EMBL:OMO86337.1};
KW Reference proteome {ECO:0000313|Proteomes:UP000188268};
KW RNA-directed DNA polymerase {ECO:0000313|EMBL:OMO86337.1};
KW Transferase {ECO:0000313|EMBL:OMO86337.1}.
FT DOMAIN 299..581
FT /note="Reverse transcriptase"
FT /evidence="ECO:0000259|PROSITE:PS50878"
SQ SEQUENCE 895 AA; 102600 MW; 74A38850CAEF5F39 CRC64;
MTWSRRMRDG MVFEKLDRCL VTESWFHLFT FSFIRVLIKP GSDHLPLLVH VLNKPHKEIR
NCKQFRFEHM WVAHEESSAV IEESWNRDEE ANVQQCIVNC GQALENWDVT VFGNVRYGIQ
RKKKELEQAY ITAQVTGVSR QLHDCLDEFN DLYDREEIMW RQRSKVSWLR EGDRNSRFFH
SVVNTRKAKN NIASIQDDGG NWHSEIKTVE KVVVDYFKQI FITSNPLHSD IEHVLGTVDQ
RVTAEMNAKL NRPFTVEDIR VAAFDMGADK SPGPDGMTPL FYQQYWHIVG EKASEMALAF
LNLRQALPDI NHTSVVLIPK NEHPCMVKDY RPISLCNVVF KIVSKALANR LGEILPEVIG
PNQSAFVPGR MIFDSSFIVF ETIHYMKNKR AGGANHMALK LDLSKAYDRV EWAFLEGMML
RLGFSQQWTS LVMSCVTTVS YSIMVNGTNT EKFSPSRGIR QGDPLSPYLF LFCMEGLSCL
LQRAELDGHI RGVAINRYAP TISHLFFVDD SILFLRASLR ECDVVLDLLR QFSLASGQQV
NVDKSAILFS SNTPVCLRES IMQHLGVQKI LDRDRYLGIP IMIDKSKKAE LQLIKDRLWK
RLQRWKGSLL SIAGTDTLIW NSTVNGSYTV RSGYYVARSL LGHDDIHVDD RSPVWRLIWS
AHVLPKVKYF FWRVIQDILP TKPQLQRRGV PIDLNCVVCG GNESSLYHVF FECTFSRQVW
VIACPWLPVY LESYEYGASF RRDRQSQTIV RQQWTPPTQG RVKINTDAAF SQHRQEAALG
VVFRDTDGHV LLSGITRITN VPNSLFAEMY TIRFGLLLAL SYSFVTCEVE SDSLLANIEL
NRQTPSLWEG GSLILQIKHI VSSFDFCSFK HVSRVANTLA HNLAHLDCDV GANYV
//