ID A0A1R3J5U8_COCAP Unreviewed; 468 AA.
AC A0A1R3J5U8;
DT 12-APR-2017, integrated into UniProtKB/TrEMBL.
DT 12-APR-2017, sequence version 1.
DT 22-FEB-2023, entry version 15.
DE SubName: Full=Zinc finger, RING/FYVE/PHD-type {ECO:0000313|EMBL:OMO90197.1};
DE Flags: Fragment;
GN ORFNames=CCACVL1_07473 {ECO:0000313|EMBL:OMO90197.1};
OS Corchorus capsularis (Jute).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus.
OX NCBI_TaxID=210143 {ECO:0000313|EMBL:OMO90197.1, ECO:0000313|Proteomes:UP000188268};
RN [1] {ECO:0000313|EMBL:OMO90197.1, ECO:0000313|Proteomes:UP000188268}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. CVL-1 {ECO:0000313|Proteomes:UP000188268};
RC TISSUE=Whole seedling {ECO:0000313|EMBL:OMO90197.1};
RA Alam M., Haque M.S., Islam M.S., Emdad E.M., Islam M.M., Ahmed B.,
RA Halim A., Hossen Q.M.M., Hossain M.Z., Ahmed R., Khan M.M., Islam R.,
RA Rashid M.M., Khan S.A., Rahman M.S., Alam M.;
RT "Corchorus capsularis genome sequencing.";
RL Submitted (SEP-2013) to the EMBL/GenBank/DDBJ databases.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:OMO90197.1}.
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DR EMBL; AWWV01008489; OMO90197.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A1R3J5U8; -.
DR STRING; 210143.A0A1R3J5U8; -.
DR EnsemblPlants; OMO90197; OMO90197; CCACVL1_07473.
DR Gramene; OMO90197; OMO90197; CCACVL1_07473.
DR OMA; ARLYCAG; -.
DR OrthoDB; 451199at2759; -.
DR Proteomes; UP000188268; Unassembled WGS sequence.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR019396; TM_Fragile-X-F-assoc.
DR InterPro; IPR001841; Znf_RING.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR PANTHER; PTHR46859; TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN; 1.
DR PANTHER; PTHR46859:SF6; TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN; 1.
DR Pfam; PF10269; Tmemb_185A; 1.
DR Pfam; PF13920; zf-C3HC4_3; 1.
DR SUPFAM; SSF57850; RING/U-box; 1.
DR PROSITE; PS50089; ZF_RING_2; 1.
PE 4: Predicted;
KW Membrane {ECO:0000256|SAM:Phobius};
KW Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00175};
KW Reference proteome {ECO:0000313|Proteomes:UP000188268};
KW Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius};
KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00175};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00175}.
FT TRANSMEM 21..39
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 78..100
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 106..126
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 147..167
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 187..206
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 421..456
FT /note="RING-type"
FT /evidence="ECO:0000259|PROSITE:PS50089"
FT NON_TER 1
FT /evidence="ECO:0000313|EMBL:OMO90197.1"
SQ SEQUENCE 468 AA; 53597 MW; 443AB8780FB560FF CRC64;
AMLVERRRVM SWRRVGKSLH ALVAHALLFT FTLLLALKLH HAVSYSWWVV YSPLWFFHAV
VARGRFSLPA PAMPHDRHWA PFHAVMATPL LVAFELLLCI RLDNSYVVDL KIVFLPLLAF
EIAILIDNIR MCRALMPGDE ESMSDEVIWE TLPHFWVAIS MVFFIAATTF TLLKLCGDVA
ALGWWDLFIN FGIAQCFAFL VCTKWFNPAI HRNSYIGESS SSSMTLRYLD WNRGLVISSD
EDRHQNRICN PQDIGGHVMK IPFICFQILL FMHLEGTPPS ARNISPPVLF SPILLLQGAG
VIIAAYRLIE KIVILVHSGA GSGRYFDISS KVLEYFGFLH HGSRLLGWWS IDEGSREEQA
RLYCSEASGY NTFSPDIVKK MPKSDLVEEI WRLQAALSEQ TEITKFSQQE FERLQNEKIL
CRVCFEEQIN VVLLPCRHHV LCSTCCEKCK RCPICRVSIE ERLPVYDV
//
