ID   A0A1R3J6F5_COCAP        Unreviewed;       644 AA.
AC   A0A1R3J6F5;
DT   12-APR-2017, integrated into UniProtKB/TrEMBL.
DT   12-APR-2017, sequence version 1.
DT   08-NOV-2023, entry version 24.
DE   RecName: Full=XS domain-containing protein {ECO:0008006|Google:ProtNLM};
GN   ORFNames=CCACVL1_07380 {ECO:0000313|EMBL:OMO90394.1};
OS   Corchorus capsularis (Jute).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus.
OX   NCBI_TaxID=210143 {ECO:0000313|EMBL:OMO90394.1, ECO:0000313|Proteomes:UP000188268};
RN   [1] {ECO:0000313|EMBL:OMO90394.1, ECO:0000313|Proteomes:UP000188268}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. CVL-1 {ECO:0000313|Proteomes:UP000188268};
RC   TISSUE=Whole seedling {ECO:0000313|EMBL:OMO90394.1};
RA   Alam M., Haque M.S., Islam M.S., Emdad E.M., Islam M.M., Ahmed B.,
RA   Halim A., Hossen Q.M.M., Hossain M.Z., Ahmed R., Khan M.M., Islam R.,
RA   Rashid M.M., Khan S.A., Rahman M.S., Alam M.;
RT   "Corchorus capsularis genome sequencing.";
RL   Submitted (SEP-2013) to the EMBL/GenBank/DDBJ databases.
CC   -!- SIMILARITY: Belongs to the SGS3 family.
CC       {ECO:0000256|ARBA:ARBA00024022}.
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:OMO90394.1}.
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DR   EMBL; AWWV01008459; OMO90394.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A1R3J6F5; -.
DR   STRING; 210143.A0A1R3J6F5; -.
DR   EnsemblPlants; OMO90394; OMO90394; CCACVL1_07380.
DR   Gramene; OMO90394; OMO90394; CCACVL1_07380.
DR   OMA; RSYHEMV; -.
DR   OrthoDB; 1222097at2759; -.
DR   Proteomes; UP000188268; Unassembled WGS sequence.
DR   GO; GO:0051607; P:defense response to virus; IEA:InterPro.
DR   GO; GO:0031047; P:regulatory ncRNA-mediated gene silencing; IEA:UniProtKB-KW.
DR   CDD; cd12266; RRM_like_XS; 1.
DR   Gene3D; 3.30.70.2890; XS domain; 1.
DR   InterPro; IPR044287; SGS3.
DR   InterPro; IPR005380; XS_domain.
DR   InterPro; IPR038588; XS_domain_sf.
DR   InterPro; IPR005381; Znf-XS_domain.
DR   PANTHER; PTHR46602; PROTEIN SUPPRESSOR OF GENE SILENCING 3; 1.
DR   PANTHER; PTHR46602:SF1; PROTEIN SUPPRESSOR OF GENE SILENCING 3; 1.
DR   Pfam; PF03468; XS; 1.
DR   Pfam; PF03470; zf-XS; 1.
PE   3: Inferred from homology;
KW   Coiled coil {ECO:0000256|ARBA:ARBA00023054};
KW   Reference proteome {ECO:0000313|Proteomes:UP000188268};
KW   RNA-mediated gene silencing {ECO:0000256|ARBA:ARBA00023158}.
FT   DOMAIN          239..277
FT                   /note="Zinc finger-XS"
FT                   /evidence="ECO:0000259|Pfam:PF03470"
FT   DOMAIN          310..423
FT                   /note="XS"
FT                   /evidence="ECO:0000259|Pfam:PF03468"
FT   REGION          1..206
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          532..565
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        13..48
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        97..122
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        168..196
FT                   /note="Acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        532..552
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   644 AA;  73947 MW;  03F88D776C1AD971 CRC64;
     MSSRKGGGNP FVAAGINSSS KGKDVSGASS PKVEQLSQGV SDVSLSSAQD DGEWEVIQRK
     PKNRAGSSAA RPWGPQNSSP RPRGGMRGGA GSGRASGNAW AMQNTDSRLT TGRGNVRPQT
     FNHVPPQPVI RPPLEHGWNW QSRAGSNPSW GLQDGHGKDN VNTEVEKEND IDDADAEDDS
     DDDPIDDSDD ELLTDDFDSD TSQKSHETRK KDRWFKKFFD SLDKLSIEEI NNPDRQWHCP
     ACQGGPGAID WYRGLQPLVT HAKTKGSKRV KLHRELAELL DEELRRRGTS VIPAGEAFGK
     WKGLKAEEKD HEIVWPPMVI IMNTRLEQDE NDKWIGMGNQ ELLEYFSSYA AVKARHSYGP
     QGHRGISLLI FESTARGYLE AERLHKHFAD QGTDREAWER RRVLFHPGGK RQLYGYMAVK
     EDLDIFNQHS QGKSRLKFEM RSYQEMVVKQ IRQMSEDNQQ LIFYKNKVAK EQRLKSALEE
     SFGIVSEKLR KTMEENRIVR QRTLMQHAEN KEEMDTQEEF FKEQIQKIHD ARDEKEEKFE
     KLQQEEREKV KQSSPNPSNT EEYRRRADDI AKFIKFQDEE METFAVERDR LIKVHEEKIA
     AMRRRHWEEE FGLEKEFDAE LNQLMEKYTP HSSKVTTTTT TNDA
//