ID A0A1R3JN50_COCAP Unreviewed; 1035 AA.
AC A0A1R3JN50;
DT 12-APR-2017, integrated into UniProtKB/TrEMBL.
DT 12-APR-2017, sequence version 1.
DT 27-MAR-2024, entry version 19.
DE SubName: Full=Reverse transcriptase {ECO:0000313|EMBL:OMO96147.1};
GN ORFNames=CCACVL1_05057 {ECO:0000313|EMBL:OMO96147.1};
OS Corchorus capsularis (Jute).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus.
OX NCBI_TaxID=210143 {ECO:0000313|EMBL:OMO96147.1, ECO:0000313|Proteomes:UP000188268};
RN [1] {ECO:0000313|EMBL:OMO96147.1, ECO:0000313|Proteomes:UP000188268}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. CVL-1 {ECO:0000313|Proteomes:UP000188268};
RC TISSUE=Whole seedling {ECO:0000313|EMBL:OMO96147.1};
RA Alam M., Haque M.S., Islam M.S., Emdad E.M., Islam M.M., Ahmed B.,
RA Halim A., Hossen Q.M.M., Hossain M.Z., Ahmed R., Khan M.M., Islam R.,
RA Rashid M.M., Khan S.A., Rahman M.S., Alam M.;
RT "Corchorus capsularis genome sequencing.";
RL Submitted (SEP-2013) to the EMBL/GenBank/DDBJ databases.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:OMO96147.1}.
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DR EMBL; AWWV01007497; OMO96147.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A1R3JN50; -.
DR STRING; 210143.A0A1R3JN50; -.
DR EnsemblPlants; OMO96147; OMO96147; CCACVL1_05057.
DR Gramene; OMO96147; OMO96147; CCACVL1_05057.
DR OrthoDB; 626340at2759; -.
DR Proteomes; UP000188268; Unassembled WGS sequence.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0003964; F:RNA-directed DNA polymerase activity; IEA:UniProtKB-KW.
DR GO; GO:0004523; F:RNA-DNA hybrid ribonuclease activity; IEA:InterPro.
DR CDD; cd06222; RNase_H_like; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR InterPro; IPR005162; Retrotrans_gag_dom.
DR InterPro; IPR044730; RNase_H-like_dom_plant.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR002156; RNaseH_domain.
DR InterPro; IPR036397; RNaseH_sf.
DR InterPro; IPR026960; RVT-Znf.
DR PANTHER; PTHR46736:SF107; RNA-DIRECTED DNA POLYMERASE (REVERSE TRANSCRIPTASE)-RELATED FAMILY PROTEIN; 1.
DR PANTHER; PTHR46736; ZF-RVT DOMAIN-CONTAINING PROTEIN; 1.
DR Pfam; PF03732; Retrotrans_gag; 1.
DR Pfam; PF13456; RVT_3; 1.
DR Pfam; PF13966; zf-RVT; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
PE 4: Predicted;
KW Nucleotidyltransferase {ECO:0000313|EMBL:OMO96147.1};
KW Reference proteome {ECO:0000313|Proteomes:UP000188268};
KW RNA-directed DNA polymerase {ECO:0000313|EMBL:OMO96147.1};
KW Transferase {ECO:0000313|EMBL:OMO96147.1}.
FT DOMAIN 249..324
FT /note="Reverse transcriptase zinc-binding"
FT /evidence="ECO:0000259|Pfam:PF13966"
FT DOMAIN 428..536
FT /note="RNase H type-1"
FT /evidence="ECO:0000259|Pfam:PF13456"
FT DOMAIN 877..968
FT /note="Retrotransposon gag"
FT /evidence="ECO:0000259|Pfam:PF03732"
FT REGION 666..689
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1035 AA; 118615 MW; 9C7BA42234B9A5C6 CRC64;
MGEIRGISIA RTAPRVSHLF FADDSLIFLR ATVAECEVLS RVLKRFELAS GQLINVDKST
VLFSSNTPDS IRASIMQYLG IHKILTRDKY LGMPIMIGKS KRAELEAKYF ARGTFLTAPL
GSNPSFVWRS LLAGHEVLKL GSRWRIGDGL NVDIWRDKWL KKPPDYKPRP KPDTICISHL
VSSLMTPDRQ WDVDLLDEFF ELDDVHCILC IPLTSLMVKD ALIWNHTGNG HYTVRSGYCV
ARRLLGKELN QVEERKEIWR IIWRAFLLPK VKYFLWRLIY NILPTKINLQ NRGVGIDGGC
AVCSEAESSL FHVFFGCYFS RRVWDMSCPW IQGYLDDWAS TDNFWECLFI KASQLGSMEL
ASSLLWLIWH NRNVALHEGV CKIPSSVCTT AARIVTEHEA SHRRLNLIPQ PRGYQLWSPP
SMGDFKLNTD ATFKKDLNQA GLGAIIRDKN VRVLVSAISR IDKVPDPLFA EIYAIRFDLI
LAMNCGFLNC EIECDSLLAI QEIKRVGKVL WEGGILIEQI RILAAQFSYV SFNHVAEISQ
IRAALCVEER TCNNRSFKSF EEVAIHPLLA LSYETNKWYQ SQPLVELGLT SSRVIKCNRL
VGLKDGKHLM DSHNKPKSSP MMRRDRPALR KLPLYSLQLR SQQVNVCQQA VYHAFTREFQ
VANMPLKGDD GKSSHGMQTK SKAIVDPSPL PLDPNSKILL QYLTDAMNEM SLAHEQKMHQ
LIGSIDRMNK SHDQLKEQTM QNRENIMAQI VPPPVAPANN NGANQVRVVP QVDAAGNNNV
PPPRDGAARG ENEAELLPRQ KLPRTLLTIL RERKVGRPSF HKPYPEEYDR LHPLPRKYKV
PDFSSFFGTS IEKTTLEHIA RFTLQCGEAN LGYHKLRLFP NSLTGAAFTW YINLPPNLVR
TWEDMERMFP TQFYRTEPEV SMADLSRFYQ KKGELDEDYL ARFKKLRNRC CTPLREEEFL
RLANNGLDME LRKKFEGVDF RDFFEMSTKV ARYETFPCER KTNEEVHHMA LTIKSQILNL
ELLKSKLMGL LSVHA
//
