ID A0A1R3JRI4_COCAP Unreviewed; 495 AA.
AC A0A1R3JRI4;
DT 12-APR-2017, integrated into UniProtKB/TrEMBL.
DT 12-APR-2017, sequence version 1.
DT 27-MAR-2024, entry version 30.
DE RecName: Full=Deoxyribodipyrimidine photo-lyase {ECO:0000256|ARBA:ARBA00014046};
DE EC=4.1.99.3 {ECO:0000256|ARBA:ARBA00013149};
DE AltName: Full=DNA photolyase {ECO:0000256|ARBA:ARBA00031671};
GN ORFNames=CCACVL1_04575 {ECO:0000313|EMBL:OMO97410.1};
OS Corchorus capsularis (Jute).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus.
OX NCBI_TaxID=210143 {ECO:0000313|EMBL:OMO97410.1, ECO:0000313|Proteomes:UP000188268};
RN [1] {ECO:0000313|EMBL:OMO97410.1, ECO:0000313|Proteomes:UP000188268}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. CVL-1 {ECO:0000313|Proteomes:UP000188268};
RC TISSUE=Whole seedling {ECO:0000313|EMBL:OMO97410.1};
RA Alam M., Haque M.S., Islam M.S., Emdad E.M., Islam M.M., Ahmed B.,
RA Halim A., Hossen Q.M.M., Hossain M.Z., Ahmed R., Khan M.M., Islam R.,
RA Rashid M.M., Khan S.A., Rahman M.S., Alam M.;
RT "Corchorus capsularis genome sequencing.";
RL Submitted (SEP-2013) to the EMBL/GenBank/DDBJ databases.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=cyclobutadipyrimidine (in DNA) = 2 pyrimidine residues (in
CC DNA).; EC=4.1.99.3; Evidence={ECO:0000256|ARBA:ARBA00033999};
CC -!- COFACTOR:
CC Name=FAD; Xref=ChEBI:CHEBI:57692;
CC Evidence={ECO:0000256|ARBA:ARBA00001974};
CC -!- SIMILARITY: Belongs to the DNA photolyase class-2 family.
CC {ECO:0000256|ARBA:ARBA00006409}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:OMO97410.1}.
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DR EMBL; AWWV01007223; OMO97410.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A1R3JRI4; -.
DR STRING; 210143.A0A1R3JRI4; -.
DR EnsemblPlants; OMO97410; OMO97410; CCACVL1_04575.
DR Gramene; OMO97410; OMO97410; CCACVL1_04575.
DR OMA; IHNYLRM; -.
DR OrthoDB; 1341644at2759; -.
DR Proteomes; UP000188268; Unassembled WGS sequence.
DR GO; GO:0003904; F:deoxyribodipyrimidine photo-lyase activity; IEA:UniProtKB-EC.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0000719; P:photoreactive repair; IEA:EnsemblPlants.
DR GO; GO:0009650; P:UV protection; IEA:EnsemblPlants.
DR Gene3D; 1.25.40.80; -; 1.
DR Gene3D; 1.10.579.10; DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3; 1.
DR Gene3D; 3.40.50.620; HUPs; 1.
DR InterPro; IPR036134; Crypto/Photolyase_FAD-like_sf.
DR InterPro; IPR036155; Crypto/Photolyase_N_sf.
DR InterPro; IPR008148; DNA_photolyase_2.
DR InterPro; IPR032673; DNA_photolyase_2_CS.
DR InterPro; IPR006050; DNA_photolyase_N.
DR InterPro; IPR014729; Rossmann-like_a/b/a_fold.
DR NCBIfam; TIGR00591; phr2; 1.
DR PANTHER; PTHR10211:SF0; DEOXYRIBODIPYRIMIDINE PHOTO-LYASE; 1.
DR PANTHER; PTHR10211; DEOXYRIBODIPYRIMIDINE PHOTOLYASE; 1.
DR Pfam; PF00875; DNA_photolyase; 1.
DR SUPFAM; SSF48173; Cryptochrome/photolyase FAD-binding domain; 1.
DR SUPFAM; SSF52425; Cryptochrome/photolyase, N-terminal domain; 1.
DR PROSITE; PS01084; DNA_PHOTOLYASES_2_2; 1.
DR PROSITE; PS51645; PHR_CRY_ALPHA_BETA; 1.
PE 3: Inferred from homology;
KW DNA damage {ECO:0000256|ARBA:ARBA00022763};
KW DNA repair {ECO:0000256|ARBA:ARBA00023204};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW FAD {ECO:0000256|ARBA:ARBA00022827};
KW Flavoprotein {ECO:0000256|ARBA:ARBA00022630};
KW Lyase {ECO:0000256|ARBA:ARBA00023239};
KW Reference proteome {ECO:0000313|Proteomes:UP000188268}.
FT DOMAIN 32..165
FT /note="Photolyase/cryptochrome alpha/beta"
FT /evidence="ECO:0000259|PROSITE:PS51645"
SQ SEQUENCE 495 AA; 57041 MW; 6F15CC8A133A8E8A CRC64;
MASLSSPSTK ATAVQAGRIR VLKEGSQPLG KGPVVYWMFR DQRVKDNWAL IHAVDQANKA
NVPVAVAFNL FDQFLGAKAR QLGFMLKGLR QLQTSIEDNL QIPFCLFQGE AEETIPKFLE
ECGASLLVTD FSPLRQIRKC KDEICKRVSD SVTIHEVDAH NIVPMWVASD KLEYSARTIR
GKIIKLLPEY LIDFPMLQPP NKKWDARNQV IDWDSLIADV SRKGAEVPEI EWCEPGETAA
MEVLMGNKDG FLTKRLKNYS TDRNIPLKPK ALSCLSPYLH FGQISAQRCA LEARGFRKLY
PQAVDTYLEE LIVRRELSDN FCYYQPHYDS LQGAWEWARK TLMDHASDKR EHIYTMEQLE
KAQTADPLWN ASQLEMVHYG KMHGFMRMYW AKKILEWTKG PKEAIEICIY LNDKYELDGR
DPSGYVGCMW SICGVHDQGW RERPIFGKIR YMNYAGCKRK FDVDGYIAYV KRLVGEIKKR
KAESQLSQKT KQLRK
//
