ID   A0A1R3JRM7_COCAP        Unreviewed;       304 AA.
AC   A0A1R3JRM7;
DT   12-APR-2017, integrated into UniProtKB/TrEMBL.
DT   12-APR-2017, sequence version 1.
DT   27-MAR-2024, entry version 24.
DE   SubName: Full=Transcription factor TFIIB {ECO:0000313|EMBL:OMO97454.1};
GN   ORFNames=CCACVL1_04551 {ECO:0000313|EMBL:OMO97454.1};
OS   Corchorus capsularis (Jute).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus.
OX   NCBI_TaxID=210143 {ECO:0000313|EMBL:OMO97454.1, ECO:0000313|Proteomes:UP000188268};
RN   [1] {ECO:0000313|EMBL:OMO97454.1, ECO:0000313|Proteomes:UP000188268}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. CVL-1 {ECO:0000313|Proteomes:UP000188268};
RC   TISSUE=Whole seedling {ECO:0000313|EMBL:OMO97454.1};
RA   Alam M., Haque M.S., Islam M.S., Emdad E.M., Islam M.M., Ahmed B.,
RA   Halim A., Hossen Q.M.M., Hossain M.Z., Ahmed R., Khan M.M., Islam R.,
RA   Rashid M.M., Khan S.A., Rahman M.S., Alam M.;
RT   "Corchorus capsularis genome sequencing.";
RL   Submitted (SEP-2013) to the EMBL/GenBank/DDBJ databases.
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:OMO97454.1}.
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DR   EMBL; AWWV01007218; OMO97454.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A1R3JRM7; -.
DR   STRING; 210143.A0A1R3JRM7; -.
DR   EnsemblPlants; OMO97454; OMO97454; CCACVL1_04551.
DR   Gramene; OMO97454; OMO97454; CCACVL1_04551.
DR   OMA; RTFTNDD; -.
DR   OrthoDB; 593690at2759; -.
DR   Proteomes; UP000188268; Unassembled WGS sequence.
DR   GO; GO:0017025; F:TBP-class protein binding; IEA:InterPro.
DR   GO; GO:0070897; P:transcription preinitiation complex assembly; IEA:InterPro.
DR   Gene3D; 1.10.472.170; -; 1.
DR   Gene3D; 1.10.472.10; Cyclin-like; 1.
DR   InterPro; IPR036915; Cyclin-like_sf.
DR   InterPro; IPR000812; TFIIB.
DR   InterPro; IPR013150; TFIIB_cyclin.
DR   InterPro; IPR013137; Znf_TFIIB.
DR   PANTHER; PTHR11618:SF13; TRANSCRIPTION INITIATION FACTOR IIB; 1.
DR   PANTHER; PTHR11618; TRANSCRIPTION INITIATION FACTOR IIB-RELATED; 1.
DR   Pfam; PF08271; TF_Zn_Ribbon; 1.
DR   Pfam; PF00382; TFIIB; 2.
DR   PRINTS; PR00685; TIFACTORIIB.
DR   SUPFAM; SSF47954; Cyclin-like; 2.
DR   SUPFAM; SSF57783; Zinc beta-ribbon; 1.
DR   PROSITE; PS51134; ZF_TFIIB; 1.
PE   4: Predicted;
KW   Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00469};
KW   Reference proteome {ECO:0000313|Proteomes:UP000188268};
KW   Transcription {ECO:0000256|ARBA:ARBA00023163};
KW   Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW   Zinc {ECO:0000256|PROSITE-ProRule:PRU00469};
KW   Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00469}.
FT   DOMAIN          2..35
FT                   /note="TFIIB-type"
FT                   /evidence="ECO:0000259|PROSITE:PS51134"
SQ   SEQUENCE   304 AA;  33522 MW;  DCC24256879CD5EF CRC64;
     MAMMVFCSDC KRETEAILDT RQGDTICTEC SLVLESHHID ESSEWRIFAD SDDNGKYDRE
     RVGSKQNLLL DQAILQTFAS NPNPKKGGGG GPFVGSLNSL NQSNSDKGLT EGFKMIENMA
     DNLGVVRTIK DGACEIFKNV EDNKSCRGRN LKATVAATLY IACKELKLSR TLKEISRVAD
     GVAMKEISRA VEVIKKRMEV ETGGVQPAEL VRRFCSKLNM NYQAIKAVEE AVEAVENFDI
     RRNPKSILAA IIYMIDQVSG SARSFKEIAI VAEVAEGTVK GSYKDVAPLA SKLIPKWYPQ
     QVLV
//