ID A0A1R3JUJ4_9ROSI Unreviewed; 377 AA.
AC A0A1R3JUJ4;
DT 12-APR-2017, integrated into UniProtKB/TrEMBL.
DT 12-APR-2017, sequence version 1.
DT 13-SEP-2023, entry version 18.
DE RecName: Full=CASP-like protein {ECO:0000256|RuleBase:RU361233};
GN ORFNames=COLO4_13922 {ECO:0000313|EMBL:OMO98421.1};
OS Corchorus olitorius.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus.
OX NCBI_TaxID=93759 {ECO:0000313|EMBL:OMO98421.1, ECO:0000313|Proteomes:UP000187203};
RN [1] {ECO:0000313|Proteomes:UP000187203}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. O-4 {ECO:0000313|Proteomes:UP000187203};
RA Alam M., Haque M.S., Islam M.S., Emdad E.M., Islam M.M., Ahmed B.,
RA Halim A., Hossen Q.M.M., Hossain M.Z., Ahmed R., Khan M.M., Islam R.,
RA Rashid M.M., Khan S.A., Rahman M.S., Alam M., Yahiya A.S., Khan M.S.,
RA Azam M.S., Haque T., Lashkar M.Z.H., Akhand A.I., Morshed G., Roy S.,
RA Uddin K.S., Rabeya T., Hossain A.S., Chowdhury A., Snigdha A.R.,
RA Mortoza M.S., Matin S.A., Hoque S.M.E., Islam M.K., Roy D.K., Haider R.,
RA Moosa M.M., Elias S.M., Hasan A.M., Jahan S., Shafiuddin M., Mahmood N.,
RA Shommy N.S.;
RT "Corchorus olitorius genome sequencing.";
RL Submitted (SEP-2013) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBUNIT: Homodimer and heterodimers. {ECO:0000256|RuleBase:RU361233}.
CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000256|ARBA:ARBA00004651,
CC ECO:0000256|RuleBase:RU361233}; Multi-pass membrane protein
CC {ECO:0000256|ARBA:ARBA00004651, ECO:0000256|RuleBase:RU361233}.
CC Membrane {ECO:0000256|ARBA:ARBA00004141}; Multi-pass membrane protein
CC {ECO:0000256|ARBA:ARBA00004141}. Nucleus
CC {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the Casparian strip membrane proteins (CASP)
CC family. {ECO:0000256|ARBA:ARBA00007651, ECO:0000256|RuleBase:RU361233}.
CC -!- CAUTION: Lacks conserved residue(s) required for the propagation of
CC feature annotation. {ECO:0000256|RuleBase:RU361233}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:OMO98421.1}.
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DR EMBL; AWUE01015337; OMO98421.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A1R3JUJ4; -.
DR STRING; 93759.A0A1R3JUJ4; -.
DR OrthoDB; 472341at2759; -.
DR Proteomes; UP000187203; Unassembled WGS sequence.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR CDD; cd11393; bHLH_AtbHLH_like; 1.
DR Gene3D; 4.10.280.10; Helix-loop-helix DNA-binding domain; 1.
DR InterPro; IPR045239; bHLH95_bHLH.
DR InterPro; IPR011598; bHLH_dom.
DR InterPro; IPR006459; CASP/CASPL.
DR InterPro; IPR006702; CASP_dom.
DR InterPro; IPR044173; CASPL.
DR InterPro; IPR036638; HLH_DNA-bd_sf.
DR NCBIfam; TIGR01569; A_tha_TIGR01569; 1.
DR PANTHER; PTHR36488; CASP-LIKE PROTEIN 1U1; 1.
DR PANTHER; PTHR36488:SF8; CASP-LIKE PROTEIN 1U1; 1.
DR Pfam; PF04535; CASP_dom; 1.
DR Pfam; PF00010; HLH; 1.
DR SMART; SM00353; HLH; 1.
DR SUPFAM; SSF47459; HLH, helix-loop-helix DNA-binding domain; 1.
DR PROSITE; PS50888; BHLH; 1.
PE 3: Inferred from homology;
KW Cell membrane {ECO:0000256|ARBA:ARBA00022475,
KW ECO:0000256|RuleBase:RU361233}; Coiled coil {ECO:0000256|SAM:Coils};
KW Membrane {ECO:0000256|RuleBase:RU361233};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000187203};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Transmembrane {ECO:0000256|RuleBase:RU361233};
KW Transmembrane helix {ECO:0000256|RuleBase:RU361233}.
FT TRANSMEM 27..46
FT /note="Helical"
FT /evidence="ECO:0000256|RuleBase:RU361233"
FT TRANSMEM 78..100
FT /note="Helical"
FT /evidence="ECO:0000256|RuleBase:RU361233"
FT TRANSMEM 112..139
FT /note="Helical"
FT /evidence="ECO:0000256|RuleBase:RU361233"
FT DOMAIN 213..265
FT /note="BHLH"
FT /evidence="ECO:0000259|PROSITE:PS50888"
FT COILED 255..285
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 377 AA; 41384 MW; 68F0F20BB7E63311 CRC64;
MESQNNTKMS GNDGKQFMSR KVSNCDLILR VLALLLTLVS AIVLGVNRQT KVVPVQIAPN
LPPVNVAAQA KWHYLSAFVY SFVSNIIACS YAAISILIAM GTRNGKKGLA AIIILLDLIM
VALLFSSNGA ALAIGLMGYK GNSHVQWNKV CNVFDKFCDQ VAVAVVLSLL GYSDKLIPPL
SQFSPLETAA AAIVDEIEKG SCRPKEANTN KKLIVTGSMK KERDRRGKMA ENYDLLQSML
PTLTLLPKAN REMILAETTT YIQSLEKEIK RLEELNKNSS SDQAKLLKGK IHLFNSDRNS
SINVTVSSNV AFFGIQSVNR PRLVTDIFMV FDYHKVEVLA ANVVVNQKQL TLTVTAVVNG
NGENTIEKIK RDIVLNL
//
