ID   A0A1R3JX02_9ROSI        Unreviewed;       891 AA.
AC   A0A1R3JX02;
DT   12-APR-2017, integrated into UniProtKB/TrEMBL.
DT   12-APR-2017, sequence version 1.
DT   27-MAR-2024, entry version 27.
DE   RecName: Full=CCHC-type domain-containing protein {ECO:0008006|Google:ProtNLM};
GN   ORFNames=COLO4_13287 {ECO:0000313|EMBL:OMO99383.1};
OS   Corchorus olitorius.
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus.
OX   NCBI_TaxID=93759 {ECO:0000313|EMBL:OMO99383.1, ECO:0000313|Proteomes:UP000187203};
RN   [1] {ECO:0000313|Proteomes:UP000187203}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. O-4 {ECO:0000313|Proteomes:UP000187203};
RA   Alam M., Haque M.S., Islam M.S., Emdad E.M., Islam M.M., Ahmed B.,
RA   Halim A., Hossen Q.M.M., Hossain M.Z., Ahmed R., Khan M.M., Islam R.,
RA   Rashid M.M., Khan S.A., Rahman M.S., Alam M., Yahiya A.S., Khan M.S.,
RA   Azam M.S., Haque T., Lashkar M.Z.H., Akhand A.I., Morshed G., Roy S.,
RA   Uddin K.S., Rabeya T., Hossain A.S., Chowdhury A., Snigdha A.R.,
RA   Mortoza M.S., Matin S.A., Hoque S.M.E., Islam M.K., Roy D.K., Haider R.,
RA   Moosa M.M., Elias S.M., Hasan A.M., Jahan S., Shafiuddin M., Mahmood N.,
RA   Shommy N.S.;
RT   "Corchorus olitorius genome sequencing.";
RL   Submitted (SEP-2013) to the EMBL/GenBank/DDBJ databases.
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:OMO99383.1}.
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DR   EMBL; AWUE01015149; OMO99383.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A1R3JX02; -.
DR   STRING; 93759.A0A1R3JX02; -.
DR   OrthoDB; 604120at2759; -.
DR   Proteomes; UP000187203; Unassembled WGS sequence.
DR   GO; GO:0004523; F:RNA-DNA hybrid ribonuclease activity; IEA:InterPro.
DR   GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR   GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR   GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR   CDD; cd06222; RNase_H_like; 1.
DR   Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR   InterPro; IPR025558; DUF4283.
DR   InterPro; IPR044730; RNase_H-like_dom_plant.
DR   InterPro; IPR012337; RNaseH-like_sf.
DR   InterPro; IPR002156; RNaseH_domain.
DR   InterPro; IPR036397; RNaseH_sf.
DR   InterPro; IPR026960; RVT-Znf.
DR   InterPro; IPR025836; Zn_knuckle_CX2CX4HX4C.
DR   InterPro; IPR001878; Znf_CCHC.
DR   InterPro; IPR000679; Znf_GATA.
DR   PANTHER; PTHR47723; OS05G0353850 PROTEIN; 1.
DR   PANTHER; PTHR47723:SF17; POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN; 1.
DR   Pfam; PF14111; DUF4283; 1.
DR   Pfam; PF13456; RVT_3; 1.
DR   Pfam; PF14392; zf-CCHC_4; 1.
DR   Pfam; PF13966; zf-RVT; 1.
DR   SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR   PROSITE; PS50114; GATA_ZN_FINGER_2; 1.
DR   PROSITE; PS50158; ZF_CCHC; 1.
PE   4: Predicted;
KW   DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW   Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00094};
KW   Reference proteome {ECO:0000313|Proteomes:UP000187203};
KW   Zinc {ECO:0000256|PROSITE-ProRule:PRU00094};
KW   Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00094}.
FT   DOMAIN          193..206
FT                   /note="CCHC-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50158"
FT   DOMAIN          582..608
FT                   /note="GATA-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50114"
FT   REGION          303..323
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   891 AA;  102747 MW;  5E10738551A83C2E CRC64;
     MDDQIEIALE EAKEEVAAVM RFALIGKIVA DRALNRRGVL NVLRSIWGTK DLEDARELGK
     NLYGLTLRTK KGMDFALSNG PWSIIGHHLI LKRWDITKAV NEIEFNEIQF WIQVHNLPLV
     MQTLSNGSKI GKTVGKVVDI EDPSWNFGIG RGFLRIKVEM DVEKPLMGGF WVPKHDNERM
     WCDIKYERLA DFCYSCGRMG HTEKNCGFSA DRENFDGRQK YGSWLRAAPL RDNGRGDREW
     KREDEQGAEM MNSQNSARLL KEWNVEQWRF VDKEEMGEVN SGIGKESEGQ PYEKENCSVD
     KRKEKGKAKV EDEEVGGIEE GNGINEGEHN LGVLVPVFQQ LNLKRGINLE DRDSSVDGRY
     KARKVDANEM LWKVYEVKET GRDKEYEGNI VKHNSKEMKS SEGKEQVFKE RKVITKLRRS
     RRRVLTEIQI QKNFELYEVP VIGVTEVENV SQEQCQSEQG KVVLKDGIEG IDPEWQPQKV
     GDLLDRENNI WRTELIQDRV TDQTCRAIQN MPISYQGGQD KVIWPAERNG EYTVKTGYAV
     KKSLENRSIQ KSPSSSHNIA ESTWRKIWSM KVPKKIRNFL WRVCSNSIAT NFLLWKRKLK
     GNPCCPFCEN VEETPEHVLL LCPWTKCVWF GIALGCRIDR ESVTTFDKWY ENIALDKGCK
     RESDYIYIMV GYTCWNIWKE RCRAIFEHKE PDPSKVLDQI RRGVAESMDL LNIDKLVDNI
     QKRRQQWELP EEGWLKMNCD GAFKDAEDDS GIGVVIRNED AKVVAGLNKT VKVNSSLMAE
     SLAVREGLKL AVNLHVPKLM IEVDSQVLVR NLTNYEKGDW EIEPIVEDIK SLLGNFEDSR
     VRWITREANQ PADWLAQQSK RRLSIENWVN KPPLSFVNIL SRDGLPTPPS V
//