ID A0A1R3K4H5_COCAP Unreviewed; 818 AA.
AC A0A1R3K4H5;
DT 12-APR-2017, integrated into UniProtKB/TrEMBL.
DT 12-APR-2017, sequence version 1.
DT 27-MAR-2024, entry version 24.
DE RecName: Full=DNA topoisomerase (ATP-hydrolyzing) {ECO:0000256|ARBA:ARBA00012895};
DE EC=5.6.2.2 {ECO:0000256|ARBA:ARBA00012895};
DE Flags: Fragment;
GN ORFNames=CCACVL1_02953 {ECO:0000313|EMBL:OMP01983.1};
OS Corchorus capsularis (Jute).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus.
OX NCBI_TaxID=210143 {ECO:0000313|EMBL:OMP01983.1, ECO:0000313|Proteomes:UP000188268};
RN [1] {ECO:0000313|EMBL:OMP01983.1, ECO:0000313|Proteomes:UP000188268}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. CVL-1 {ECO:0000313|Proteomes:UP000188268};
RC TISSUE=Whole seedling {ECO:0000313|EMBL:OMP01983.1};
RA Alam M., Haque M.S., Islam M.S., Emdad E.M., Islam M.M., Ahmed B.,
RA Halim A., Hossen Q.M.M., Hossain M.Z., Ahmed R., Khan M.M., Islam R.,
RA Rashid M.M., Khan S.A., Rahman M.S., Alam M.;
RT "Corchorus capsularis genome sequencing.";
RL Submitted (SEP-2013) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the type II topoisomerase GyrA/ParC subunit
CC family. {ECO:0000256|ARBA:ARBA00008263}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:OMP01983.1}.
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DR EMBL; AWWV01006320; OMP01983.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A1R3K4H5; -.
DR STRING; 210143.A0A1R3K4H5; -.
DR EnsemblPlants; OMP01983; OMP01983; CCACVL1_02953.
DR Gramene; OMP01983; OMP01983; CCACVL1_02953.
DR OMA; THHWLLF; -.
DR OrthoDB; 1043at2759; -.
DR Proteomes; UP000188268; Unassembled WGS sequence.
DR GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003918; F:DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity; IEA:UniProtKB-EC.
DR GO; GO:0006265; P:DNA topological change; IEA:InterPro.
DR CDD; cd00187; TOP4c; 1.
DR Gene3D; 3.30.1360.40; -; 1.
DR Gene3D; 2.120.10.90; DNA gyrase/topoisomerase IV, subunit A, C-terminal; 1.
DR Gene3D; 3.90.199.10; Topoisomerase II, domain 5; 1.
DR Gene3D; 1.10.268.10; Topoisomerase, domain 3; 1.
DR InterPro; IPR006691; GyrA/parC_rep.
DR InterPro; IPR035516; Gyrase/topoIV_suA_C.
DR InterPro; IPR013760; Topo_IIA-like_dom_sf.
DR InterPro; IPR013758; Topo_IIA_A/C_ab.
DR InterPro; IPR013757; Topo_IIA_A_a_sf.
DR InterPro; IPR002205; Topo_IIA_dom_A.
DR NCBIfam; TIGR01063; gyrA; 1.
DR PANTHER; PTHR43493:SF5; DNA GYRASE SUBUNIT A, CHLOROPLASTIC_MITOCHONDRIAL; 1.
DR PANTHER; PTHR43493; DNA GYRASE/TOPOISOMERASE SUBUNIT A; 1.
DR Pfam; PF03989; DNA_gyraseA_C; 6.
DR Pfam; PF00521; DNA_topoisoIV; 1.
DR SMART; SM00434; TOP4c; 1.
DR SUPFAM; SSF101904; GyrA/ParC C-terminal domain-like; 1.
DR SUPFAM; SSF56719; Type II DNA topoisomerase; 1.
PE 3: Inferred from homology;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Isomerase {ECO:0000256|ARBA:ARBA00023235};
KW Reference proteome {ECO:0000313|Proteomes:UP000188268};
KW Topoisomerase {ECO:0000256|ARBA:ARBA00023029}.
FT DOMAIN 1..446
FT /note="DNA topoisomerase type IIA"
FT /evidence="ECO:0000259|SMART:SM00434"
FT COILED 432..459
FT /evidence="ECO:0000256|SAM:Coils"
FT NON_TER 818
FT /evidence="ECO:0000313|EMBL:OMP01983.1"
SQ SEQUENCE 818 AA; 90269 MW; CEFEFC959F0FD435 CRC64;
MAYALSVMLG RALPDVRDGL KPVHRRILYA MHELGLSSRK PFKKCARVVG EVLGKFHPHG
DTAVYDSLVR MAQDFSLRFP LIQGHGNFGS IDADPAAAMR YTECRLEALT EAILLADLDQ
NTVDFIPNFD NSHKEPSLLP ARLPTLLLNG SSGIAVGMAT NIPPHNLGEL VDVLCALIHN
PDASLQELLE CMPGPDFPTG GLIMGNLGIL DAYRTGRGRI VVRGKAEIEL LDSKTKRSAI
IIKEIPYQTN KSSLVEKIAE LVESKSLEGI SDIRDESDRT GMRVVIELKR GADPSIVLNN
LYRLSALQSS FSCNMVGILD GQPKLMGLKE LLQAFLDFRC SVVERRARYK LSQAQDRRHI
VEGIVVGLDN LDRVIGIIRE ASSTATATAG LRNEFNLSDK QAEAILDINL RRLNLLERKK
FVDESGSLME QISKLTELLS SQKNILQLIE QEAIELKNKF SSPRRSILED SDGGQLEDID
VIPNEEMLLA FSEKGYVKRM KPDTFNLQNR GTIGKSVGKL RVNDAMSDFI VCRAHDHVLY
FSDRGTVYSA RAYKIPECSR TAAGIPLVQI ISLPEGERVT SIISVSEFSE DQFLVMLTVN
GYIKKVSLNS FSAIRSTGII AIQLVPGDEL KWVRCCTNDD LVAMASQNGM VILSSCHIIR
ALSRNTRGAI AMRLKEGDKM ASMDIIPAAR HKDLDQSEEE SANNEENSSG PWLLFISENG
YGKRVPLSSF RQLPLNRVGL IGYKFSSEDR LAAVFVVGFS VAEDGESDEQ VVLVSQSGTV
NRIKVRDISI QSRYARGVIL MRLEHAGKIQ SASLISAS
//
