ID A0A1R3K7R4_COCAP Unreviewed; 380 AA.
AC A0A1R3K7R4;
DT 12-APR-2017, integrated into UniProtKB/TrEMBL.
DT 12-APR-2017, sequence version 1.
DT 03-MAY-2023, entry version 30.
DE SubName: Full=VHS domain-containing protein {ECO:0000313|EMBL:OMP03048.1};
GN ORFNames=CCACVL1_02574 {ECO:0000313|EMBL:OMP03048.1};
OS Corchorus capsularis (Jute).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus.
OX NCBI_TaxID=210143 {ECO:0000313|EMBL:OMP03048.1, ECO:0000313|Proteomes:UP000188268};
RN [1] {ECO:0000313|EMBL:OMP03048.1, ECO:0000313|Proteomes:UP000188268}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. CVL-1 {ECO:0000313|Proteomes:UP000188268};
RC TISSUE=Whole seedling {ECO:0000313|EMBL:OMP03048.1};
RA Alam M., Haque M.S., Islam M.S., Emdad E.M., Islam M.M., Ahmed B.,
RA Halim A., Hossen Q.M.M., Hossain M.Z., Ahmed R., Khan M.M., Islam R.,
RA Rashid M.M., Khan S.A., Rahman M.S., Alam M.;
RT "Corchorus capsularis genome sequencing.";
RL Submitted (SEP-2013) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000256|ARBA:ARBA00004170};
CC Peripheral membrane protein {ECO:0000256|ARBA:ARBA00004170}.
CC -!- SIMILARITY: Belongs to the TOM1 family.
CC {ECO:0000256|ARBA:ARBA00007708}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:OMP03048.1}.
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DR EMBL; AWWV01006136; OMP03048.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A1R3K7R4; -.
DR STRING; 210143.A0A1R3K7R4; -.
DR EnsemblPlants; OMP03048; OMP03048; CCACVL1_02574.
DR Gramene; OMP03048; OMP03048; CCACVL1_02574.
DR OMA; NWSLNLR; -.
DR OrthoDB; 609735at2759; -.
DR Proteomes; UP000188268; Unassembled WGS sequence.
DR GO; GO:0005737; C:cytoplasm; IEA:EnsemblPlants.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0035091; F:phosphatidylinositol binding; IEA:InterPro.
DR GO; GO:0043130; F:ubiquitin binding; IEA:EnsemblPlants.
DR GO; GO:0043328; P:protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway; IEA:InterPro.
DR CDD; cd14231; GAT_GGA-like_plant; 1.
DR CDD; cd03561; VHS; 1.
DR Gene3D; 1.20.58.160; -; 1.
DR Gene3D; 1.25.40.90; -; 1.
DR InterPro; IPR008942; ENTH_VHS.
DR InterPro; IPR004152; GAT_dom.
DR InterPro; IPR038425; GAT_sf.
DR InterPro; IPR044836; TOL_plant.
DR InterPro; IPR002014; VHS_dom.
DR PANTHER; PTHR46646; TOM1-LIKE PROTEIN 1; 1.
DR PANTHER; PTHR46646:SF5; TOM1-LIKE PROTEIN 2; 1.
DR Pfam; PF03127; GAT; 1.
DR Pfam; PF00790; VHS; 1.
DR SMART; SM00288; VHS; 1.
DR SUPFAM; SSF48464; ENTH/VHS domain; 1.
DR SUPFAM; SSF89009; GAT-like domain; 1.
DR PROSITE; PS50909; GAT; 1.
DR PROSITE; PS50179; VHS; 1.
PE 3: Inferred from homology;
KW Protein transport {ECO:0000256|ARBA:ARBA00022927};
KW Reference proteome {ECO:0000313|Proteomes:UP000188268};
KW Transport {ECO:0000256|ARBA:ARBA00022448}.
FT DOMAIN 45..172
FT /note="VHS"
FT /evidence="ECO:0000259|PROSITE:PS50179"
FT DOMAIN 220..306
FT /note="GAT"
FT /evidence="ECO:0000259|PROSITE:PS50909"
FT REGION 306..380
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 306..328
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 339..380
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 380 AA; 42217 MW; 98A3981D8EECF9F9 CRC64;
MDKMKLSQWG ERLKTGGAQM GRMVSGKMKE ILQGPTQESK MVDEATLETL EEPNWGMNMR
ICSMINSEVF NGTEVVRAIK KKISGKNVAS QRLSLDLLEA CTVNCEKVAS EVASEKVLEE
MVKMIEDPFT DHGNRERVSQ LIRAWGQSED LAYLPVFQQT YMSLKGRSTQ LPVNNENSPP
LHTMESYMEE PLPPSENYPV TNTGSHGSNH NMFSYSYGTL SDEERKELFE VTRNSLEVLS
SMLNAETNHK PTKDELTESM LEKCKQSQPI IQMLIGTTED DGILFEALNL NDEIQQVITK
FDQLQAGSES ERQLPENSGT TGTEVNASAP PIESLKETTA GASFPSPSTH SETKMDASLK
GDSSELSSVS DKKILNVNEN
//
