ID A0A1R3KAS3_9ROSI Unreviewed; 1374 AA.
AC A0A1R3KAS3;
DT 12-APR-2017, integrated into UniProtKB/TrEMBL.
DT 12-APR-2017, sequence version 1.
DT 24-JAN-2024, entry version 24.
DE RecName: Full=KOW domain-containing protein {ECO:0000259|SMART:SM00739};
GN ORFNames=COLO4_09867 {ECO:0000313|EMBL:OMP04197.1};
OS Corchorus olitorius.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus.
OX NCBI_TaxID=93759 {ECO:0000313|EMBL:OMP04197.1, ECO:0000313|Proteomes:UP000187203};
RN [1] {ECO:0000313|Proteomes:UP000187203}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. O-4 {ECO:0000313|Proteomes:UP000187203};
RA Alam M., Haque M.S., Islam M.S., Emdad E.M., Islam M.M., Ahmed B.,
RA Halim A., Hossen Q.M.M., Hossain M.Z., Ahmed R., Khan M.M., Islam R.,
RA Rashid M.M., Khan S.A., Rahman M.S., Alam M., Yahiya A.S., Khan M.S.,
RA Azam M.S., Haque T., Lashkar M.Z.H., Akhand A.I., Morshed G., Roy S.,
RA Uddin K.S., Rabeya T., Hossain A.S., Chowdhury A., Snigdha A.R.,
RA Mortoza M.S., Matin S.A., Hoque S.M.E., Islam M.K., Roy D.K., Haider R.,
RA Moosa M.M., Elias S.M., Hasan A.M., Jahan S., Shafiuddin M., Mahmood N.,
RA Shommy N.S.;
RT "Corchorus olitorius genome sequencing.";
RL Submitted (SEP-2013) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the SPT5 family.
CC {ECO:0000256|ARBA:ARBA00006956}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:OMP04197.1}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AWUE01014278; OMP04197.1; -; Genomic_DNA.
DR STRING; 93759.A0A1R3KAS3; -.
DR OrthoDB; 24955at2759; -.
DR Proteomes; UP000187203; Unassembled WGS sequence.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-KW.
DR GO; GO:0006354; P:DNA-templated transcription elongation; IEA:InterPro.
DR GO; GO:0032784; P:regulation of DNA-templated transcription elongation; IEA:InterPro.
DR GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IEA:InterPro.
DR CDD; cd06081; KOW_Spt5_1; 1.
DR CDD; cd06084; KOW_Spt5_4; 1.
DR CDD; cd09888; NGN_Euk; 1.
DR Gene3D; 2.30.30.30; -; 2.
DR Gene3D; 3.30.70.940; NusG, N-terminal domain; 1.
DR InterPro; IPR005824; KOW.
DR InterPro; IPR041973; KOW_Spt5_1.
DR InterPro; IPR041977; KOW_Spt5_4.
DR InterPro; IPR005100; NGN-domain.
DR InterPro; IPR036735; NGN_dom_sf.
DR InterPro; IPR039385; NGN_Euk.
DR InterPro; IPR014722; Rib_uL2_dom2.
DR InterPro; IPR039659; SPT5.
DR InterPro; IPR008991; Translation_prot_SH3-like_sf.
DR PANTHER; PTHR11125:SF8; PROTEIN RNA-DIRECTED DNA METHYLATION 3; 1.
DR PANTHER; PTHR11125; SUPPRESSOR OF TY 5; 1.
DR Pfam; PF03439; Spt5-NGN; 1.
DR SMART; SM00739; KOW; 3.
DR SUPFAM; SSF50104; Translation proteins SH3-like domain; 1.
PE 3: Inferred from homology;
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000187203}.
FT DOMAIN 225..252
FT /note="KOW"
FT /evidence="ECO:0000259|SMART:SM00739"
FT DOMAIN 467..494
FT /note="KOW"
FT /evidence="ECO:0000259|SMART:SM00739"
FT DOMAIN 573..600
FT /note="KOW"
FT /evidence="ECO:0000259|SMART:SM00739"
FT REGION 1..69
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 373..399
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 535..570
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 652..684
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 714..816
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 841..1067
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 373..388
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 538..556
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 714..757
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 852..866
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 882..896
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 920..970
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 982..1032
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1039..1067
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1374 AA; 148536 MW; 45D0978482A081E0 CRC64;
MSSKGKGKAK EVSSGKRKTS GGAGESHRKR KKPGVLQFFE EAAEVDDNES SDDSDWENNF
MDKEPDLNVN KQTGKNYNLP FVLKEEVIEE EFDKMMEERY KDGAGFVTYA EDSYEDKESI
DKNSDVPSSK DPTIWKVKCV VGRERHSAFC LMQKFIDLKS LGNKLQIISA FSVDHIKGFF
YIEAEKQCDI NEACKGLTYI YWSRVMPVPS NEVYQLLSVR TKRTEITEGT WARIKNGNYK
GDLCQVVAVN NERKRATVKL IPRIDLQAMA AKFGGGVSLK KTVIPAPKLI SSSELEEFQP
LIQIRRDRDT GLYFQVLDGM MLKDGYLYKR VSVDSINCWG VMPTDEELLK FSHSDNNESG
DMEWLAQLYG EQKRKKTVKT DKGGGKGGGE KGEGSSGSGM ENGFELHDLV CFGRKDFGLI
VGMEKDDSYK ILKEAPEGPV VVTVEQRELK SGPLDTKFTA LDQHSKTISI NDTVKVLEGQ
HEGKQGIVKQ IYRGTIFLYD ENETDNGGFF CCKSQNCEKI KQFFDVCKDK GGEPDTSGFE
DFTSSPKSPL SPEKSQQERG TRSDFNRGNR EGMFSIGQTL RIRVGPLKGY LCRVLAVHYS
DVTVKLDSKQ KVLTVKNEHL AEVQGKSYAA NTSEHDGSSS FKPFDLGAEG SSGDWLDRSG
ASADGGGWNA ERSSWPSFSA GTSNQVEANN SNACGAWDTV KKDGADTAWG CKSTSNQNSS
WGAAVSSGDN DKKTDGATTS WETKVTTNQN SAWATGGSDQ AGAWGKAIPS TEDPSGASED
VGGSWGQAKL KIGNPAESWD KGKNVTETSS GAWGDAAAKE NQVSLWGKDK AVVEDGLLET
KENKDVSEGH WGSNALGSNQ QDSWGKKKDA SGSEGNSWGK AAEKWGNNNG SGGSKGGWGS
AASVPENATG GWGNAGGCSS KPEAGNNDES SGWKKANDFR ENQTTNWNNN NTEGGAGLTR
GGSWNQSDGG ISWGKGDGGS SWSKGGGSSG GEQSLGNAGN DSKGWKNQND GWNKPKSSGS
DQGPSGWNKQ KMESEDGTAP KDSNWNSGPG DASQDSGWGK KSNWNSGSAN QDPGWVILVV
QAMIQGVARK AIGNQELEMQ ARVQIGVRKA IGTQEVQTRI KVGPRKIIQT LDLMMQQKVL
VGERKMTLIQ ELQMQIRIQT GAQKVAGVLE PVILAKTLGV KRGIGTLVLV VQARIQVGAR
KATGTRDLEM QARVQVGARK AIGTREVEMK TKVRLLVIGE IGGEALVVET GEVFVGEVGV
RIIVGSYPIH LLGPNLQAGT SQLATMILKK VRTKDRALVE VGVAKADRAL VEVGVAKADR
APVEVGVAKT LAGIEEQAPE TKMEKLGIIK IHGESQHQVL GDRGVVVARV DGNL
//
