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Database: UniProt
Entry: A0A1R3KHA2_COCAP
LinkDB: A0A1R3KHA2_COCAP
Original site: A0A1R3KHA2_COCAP 
ID   A0A1R3KHA2_COCAP        Unreviewed;      1399 AA.
AC   A0A1R3KHA2;
DT   12-APR-2017, integrated into UniProtKB/TrEMBL.
DT   12-APR-2017, sequence version 1.
DT   24-JAN-2024, entry version 25.
DE   RecName: Full=Reverse transcriptase {ECO:0008006|Google:ProtNLM};
GN   ORFNames=CCACVL1_01552 {ECO:0000313|EMBL:OMP06477.1};
OS   Corchorus capsularis (Jute).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus.
OX   NCBI_TaxID=210143 {ECO:0000313|EMBL:OMP06477.1, ECO:0000313|Proteomes:UP000188268};
RN   [1] {ECO:0000313|EMBL:OMP06477.1, ECO:0000313|Proteomes:UP000188268}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. CVL-1 {ECO:0000313|Proteomes:UP000188268};
RC   TISSUE=Whole seedling {ECO:0000313|EMBL:OMP06477.1};
RA   Alam M., Haque M.S., Islam M.S., Emdad E.M., Islam M.M., Ahmed B.,
RA   Halim A., Hossen Q.M.M., Hossain M.Z., Ahmed R., Khan M.M., Islam R.,
RA   Rashid M.M., Khan S.A., Rahman M.S., Alam M.;
RT   "Corchorus capsularis genome sequencing.";
RL   Submitted (SEP-2013) to the EMBL/GenBank/DDBJ databases.
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:OMP06477.1}.
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DR   EMBL; AWWV01004903; OMP06477.1; -; Genomic_DNA.
DR   STRING; 210143.A0A1R3KHA2; -.
DR   EnsemblPlants; OMP06477; OMP06477; CCACVL1_01552.
DR   Gramene; OMP06477; OMP06477; CCACVL1_01552.
DR   OMA; QDIMEME; -.
DR   OrthoDB; 5401763at2759; -.
DR   Proteomes; UP000188268; Unassembled WGS sequence.
DR   GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR   GO; GO:0004523; F:RNA-DNA hybrid ribonuclease activity; IEA:InterPro.
DR   CDD; cd06222; RNase_H_like; 1.
DR   Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR   InterPro; IPR025558; DUF4283.
DR   InterPro; IPR044730; RNase_H-like_dom_plant.
DR   InterPro; IPR012337; RNaseH-like_sf.
DR   InterPro; IPR002156; RNaseH_domain.
DR   InterPro; IPR036397; RNaseH_sf.
DR   InterPro; IPR026960; RVT-Znf.
DR   PANTHER; PTHR33116:SF67; REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED; 1.
DR   PANTHER; PTHR33116; REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED; 1.
DR   Pfam; PF14111; DUF4283; 1.
DR   Pfam; PF13456; RVT_3; 1.
DR   Pfam; PF13966; zf-RVT; 1.
DR   SUPFAM; SSF53098; Ribonuclease H-like; 1.
PE   4: Predicted;
KW   Reference proteome {ECO:0000313|Proteomes:UP000188268};
KW   Signal {ECO:0000256|SAM:SignalP}.
FT   SIGNAL          1..20
FT                   /evidence="ECO:0000256|SAM:SignalP"
FT   CHAIN           21..1399
FT                   /note="Reverse transcriptase"
FT                   /evidence="ECO:0000256|SAM:SignalP"
FT                   /id="PRO_5013000711"
FT   DOMAIN          99..209
FT                   /note="DUF4283"
FT                   /evidence="ECO:0000259|Pfam:PF14111"
FT   DOMAIN          1066..1158
FT                   /note="Reverse transcriptase zinc-binding"
FT                   /evidence="ECO:0000259|Pfam:PF13966"
FT   DOMAIN          1263..1382
FT                   /note="RNase H type-1"
FT                   /evidence="ECO:0000259|Pfam:PF13456"
FT   REGION          303..323
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          399..438
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        422..438
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   1399 AA;  157441 MW;  AEDB152DF778BEA3 CRC64;
     MTFSLVSFSV SSLPLGLSSG AADLYVNSDS YLDFQFEFLK VVQDKIYPGY HKSDFPIRNL
     EEDEKDKIVI DGDWVEAPVG QQGGGYLIGK LLLHKPATVE GLRAVFQQIW KLRRDLLVRE
     VGERLFVFQY ANVLERDRVS VSQLWLFHKA LLVLREFDGV QQSESIEFDT CPFWVKAFGI
     PFQMVNERVG TVVGESMRRV LDVDANSGRY LRIRIDMDLQ RPFKTVSTLT YQDGEAEIKF
     DYEKRPDYCW VCGLVDHQES DYAVAVAMKI ENGFVIQKYK PDKSKSSFVM GRASVSLVQR
     QRRGGAINRQ GSQSVPAKSN TSITSPFRRH VDSMLLHGRR VARALAYNDV FCEIISKMDA
     RAVETGQDFQ GGYNNEDPRR VVDKSALTNV MVVTYRGAEK GGRQSQNGKE KECRAGNAGN
     SFIPHGENSS GESSSSSSIS PNANWVVPII GGPSQNCVIP GVGPREVGSN LGLNYMVNSS
     LDGVARGLEI EKGDGVGAIQ DAVENSTTEG YDPTSPFVFG TGSSGTRKVR KWKKAARVSE
     QYSFDTLCHE QPFKVGSKRS AGICAKGGSA YGVDCNGRSV GLALLWMKDE CISLLSYSFW
     HIDVSIGSSD KWQFTGFYGQ LDTNRRYESW SLLRSLFHED FDMAIKKAWP DGDVDIVKKI
     KACGTTLEDW NQTMFGNLQF NIAKKQKEFG SLFARGASGN HAELDKCNRD LDKLLHQEEL
     LWRQRPKTHW LKVRDRNTRF FHAVASSRKQ KKQILSIKED ARNTHTEQTG IMSTFTNYFK
     GVFTTSNPTQ AAIHEVLQHM ECRVTEQMQI QLEQPFTARE IQHAAFQMGG SKAPGPDGMS
     PLFFQKCWSV VGKDVVNYAL KFLNNNESLP DVNHTNVVLI PKIDDPKLAK DFRPISLCNV
     IFRIVSKALA NRSCEEVISL LDMFEAASGQ KININKSAVL FSANTTSGVK DELMNFLGVQ
     RVLDNDKYLG LPIMIGRSKC REFRFLKDRL QKRINAWNSK LFSKAGKAVM IQAVAQATPV
     YLMSVFLFPK SFLQELNAMI ARFCLVVPRQ NEEDRLIWNG TMLGEFTVCS AYHVARRVIG
     RQELPLQLRS PIWRYIWSAG IMPKIQYFMW RLVWNILPTK SNLNKRGMEI AGTCEVCGGE
     ESADAHVFFN CHLSKLVWED ACPWVLSCIE QWDLNGNFWE FFLEKAKAIG QFDRVCTILW
     LLWGNSNRAL YEAFCSMPNA IVRAATRILD QVCAATSRIG EILMGQSRQI AWMPPPLGVM
     KINTDASFST ENGEAGLGVV IRDDVGNVIA SGSRRLYFIA DSLYAEVHAI LFGFEMALEL
     GLDRCIVESD SLLAIREINK LDTVFWEGGC LIHEIRELAS LFEFCSFQFV NREANMLAHS
     LVGLRLDNVW CGTLPLDVL
//
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