ID A0A1R4B1E5_9VIBR Unreviewed; 224 AA.
AC A0A1R4B1E5;
DT 12-APR-2017, integrated into UniProtKB/TrEMBL.
DT 12-APR-2017, sequence version 1.
DT 27-MAR-2024, entry version 18.
DE RecName: Full=Ribonuclease T {ECO:0000256|HAMAP-Rule:MF_00157};
DE EC=3.1.13.- {ECO:0000256|HAMAP-Rule:MF_00157};
DE AltName: Full=Exoribonuclease T {ECO:0000256|HAMAP-Rule:MF_00157};
DE Short=RNase T {ECO:0000256|HAMAP-Rule:MF_00157};
GN Name=rnt {ECO:0000256|HAMAP-Rule:MF_00157,
GN ECO:0000313|EMBL:SJL82740.1};
GN ORFNames=VPAL9027_00677 {ECO:0000313|EMBL:SJL82740.1};
OS Vibrio palustris.
OC Bacteria; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae;
OC Vibrio.
OX NCBI_TaxID=1918946 {ECO:0000313|EMBL:SJL82740.1, ECO:0000313|Proteomes:UP000189475};
RN [1] {ECO:0000313|EMBL:SJL82740.1, ECO:0000313|Proteomes:UP000189475}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=CECT 9027 {ECO:0000313|EMBL:SJL82740.1,
RC ECO:0000313|Proteomes:UP000189475};
RA Peterson S.W.;
RL Submitted (FEB-2017) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Trims short 3' overhangs of a variety of RNA species, leaving
CC a one or two nucleotide 3' overhang. Responsible for the end-turnover
CC of tRNA: specifically removes the terminal AMP residue from uncharged
CC tRNA (tRNA-C-C-A). Also appears to be involved in tRNA biosynthesis.
CC {ECO:0000256|HAMAP-Rule:MF_00157}.
CC -!- COFACTOR:
CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420;
CC Evidence={ECO:0000256|HAMAP-Rule:MF_00157};
CC Note=Binds two Mg(2+) per subunit. The active form of the enzyme binds
CC two Mg(2+) ions in its active site. The first Mg(2+) forms only one
CC salt bridge with the protein. {ECO:0000256|HAMAP-Rule:MF_00157};
CC -!- SUBUNIT: Homodimer. {ECO:0000256|HAMAP-Rule:MF_00157}.
CC -!- SIMILARITY: Belongs to the RNase T family. {ECO:0000256|HAMAP-
CC Rule:MF_00157}.
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DR EMBL; FUFT01000002; SJL82740.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A1R4B1E5; -.
DR STRING; 1918946.VPAL9027_00677; -.
DR OrthoDB; 9778264at2; -.
DR Proteomes; UP000189475; Unassembled WGS sequence.
DR GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-UniRule.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0016896; F:RNA exonuclease activity, producing 5'-phosphomonoesters; IEA:UniProtKB-UniRule.
DR GO; GO:0006259; P:DNA metabolic process; IEA:UniProt.
DR GO; GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
DR CDD; cd06134; RNaseT; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR HAMAP; MF_00157; RNase_T; 1.
DR InterPro; IPR013520; Exonuclease_RNaseT/DNA_pol3.
DR InterPro; IPR005987; RNase_T.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR036397; RNaseH_sf.
DR NCBIfam; TIGR01298; RNaseT; 1.
DR PANTHER; PTHR30231; DNA POLYMERASE III SUBUNIT EPSILON; 1.
DR PANTHER; PTHR30231:SF2; RIBONUCLEASE T; 1.
DR Pfam; PF00929; RNase_T; 1.
DR SMART; SM00479; EXOIII; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
PE 3: Inferred from homology;
KW Exonuclease {ECO:0000256|ARBA:ARBA00022839, ECO:0000256|HAMAP-
KW Rule:MF_00157};
KW Hydrolase {ECO:0000256|HAMAP-Rule:MF_00157, ECO:0000313|EMBL:SJL82740.1};
KW Magnesium {ECO:0000256|HAMAP-Rule:MF_00157};
KW Metal-binding {ECO:0000256|HAMAP-Rule:MF_00157};
KW Nuclease {ECO:0000256|ARBA:ARBA00022722, ECO:0000256|HAMAP-Rule:MF_00157};
KW Reference proteome {ECO:0000313|Proteomes:UP000189475};
KW tRNA processing {ECO:0000256|ARBA:ARBA00022694, ECO:0000256|HAMAP-
KW Rule:MF_00157}.
FT DOMAIN 18..204
FT /note="Exonuclease"
FT /evidence="ECO:0000259|SMART:SM00479"
FT ACT_SITE 182
FT /note="Proton donor/acceptor"
FT /evidence="ECO:0000256|HAMAP-Rule:MF_00157"
FT BINDING 23
FT /ligand="Mg(2+)"
FT /ligand_id="ChEBI:CHEBI:18420"
FT /ligand_label="1"
FT /ligand_note="catalytic"
FT /evidence="ECO:0000256|HAMAP-Rule:MF_00157"
FT BINDING 23
FT /ligand="Mg(2+)"
FT /ligand_id="ChEBI:CHEBI:18420"
FT /ligand_label="2"
FT /ligand_note="catalytic"
FT /evidence="ECO:0000256|HAMAP-Rule:MF_00157"
FT BINDING 25
FT /ligand="Mg(2+)"
FT /ligand_id="ChEBI:CHEBI:18420"
FT /ligand_label="2"
FT /ligand_note="catalytic"
FT /evidence="ECO:0000256|HAMAP-Rule:MF_00157"
FT BINDING 182
FT /ligand="Mg(2+)"
FT /ligand_id="ChEBI:CHEBI:18420"
FT /ligand_label="2"
FT /ligand_note="catalytic"
FT /evidence="ECO:0000256|HAMAP-Rule:MF_00157"
FT BINDING 187
FT /ligand="Mg(2+)"
FT /ligand_id="ChEBI:CHEBI:18420"
FT /ligand_label="2"
FT /ligand_note="catalytic"
FT /evidence="ECO:0000256|HAMAP-Rule:MF_00157"
FT SITE 29
FT /note="Important for substrate binding and specificity"
FT /evidence="ECO:0000256|HAMAP-Rule:MF_00157"
FT SITE 77
FT /note="Important for substrate binding and specificity"
FT /evidence="ECO:0000256|HAMAP-Rule:MF_00157"
FT SITE 125
FT /note="Important for substrate binding and specificity"
FT /evidence="ECO:0000256|HAMAP-Rule:MF_00157"
FT SITE 147
FT /note="Important for substrate binding and specificity"
FT /evidence="ECO:0000256|HAMAP-Rule:MF_00157"
SQ SEQUENCE 224 AA; 24862 MW; 229924FD77FCFE7F CRC64;
MNEIDETLTL RKRFRGYFPV VIDVETAGFN SHTDALLEIC AVTLRMDENG VLHRASTLHF
HVEPFEGANL EPAALEFTGI RDPYSPLRGA VSEDYALKEI YKLVRKEQKN AGCSRAIMVA
HNAAFDHGFV MAANERSKLK RVPFHPFATF DTATLSGLAF GQTVLAKACR VAGMEFDNNE
AHSALYDTEQ TAELFCRIVN KWKALGGWPI APVDDAPSSD VNEQ
//
