ID A0A1S2QPU8_9BACI Unreviewed; 616 AA.
AC A0A1S2QPU8;
DT 12-APR-2017, integrated into UniProtKB/TrEMBL.
DT 12-APR-2017, sequence version 1.
DT 27-MAR-2024, entry version 11.
DE SubName: Full=DNA ligase D {ECO:0000313|EMBL:OIK07643.1};
GN ORFNames=BIV59_20815 {ECO:0000313|EMBL:OIK07643.1};
OS Bacillus sp. MUM 13.
OC Bacteria; Bacillota; Bacilli; Bacillales; Bacillaceae; Bacillus.
OX NCBI_TaxID=1678001 {ECO:0000313|EMBL:OIK07643.1, ECO:0000313|Proteomes:UP000180199};
RN [1] {ECO:0000313|EMBL:OIK07643.1, ECO:0000313|Proteomes:UP000180199}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=MUM 13 {ECO:0000313|EMBL:OIK07643.1,
RC ECO:0000313|Proteomes:UP000180199};
RA Lee L.-H., Ser H.-L.;
RT "Genome sequence of Bacillus sp. MUM 13.";
RL Submitted (OCT-2016) to the EMBL/GenBank/DDBJ databases.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:OIK07643.1}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; MLYQ01000122; OIK07643.1; -; Genomic_DNA.
DR RefSeq; WP_071353382.1; NZ_MLYQ01000122.1.
DR AlphaFoldDB; A0A1S2QPU8; -.
DR Proteomes; UP000180199; Unassembled WGS sequence.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0003910; F:DNA ligase (ATP) activity; IEA:InterPro.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.
DR GO; GO:0006281; P:DNA repair; IEA:UniProtKB-KW.
DR CDD; cd07906; Adenylation_DNA_ligase_LigD_LigC; 1.
DR Gene3D; 3.30.1490.70; -; 1.
DR Gene3D; 3.30.470.30; DNA ligase/mRNA capping enzyme; 1.
DR Gene3D; 3.90.920.10; DNA primase, PRIM domain; 1.
DR InterPro; IPR012310; DNA_ligase_ATP-dep_cent.
DR InterPro; IPR016059; DNA_ligase_ATP-dep_CS.
DR InterPro; IPR014145; LigD_pol_dom.
DR InterPro; IPR014143; NHEJ_ligase_prk.
DR NCBIfam; TIGR02778; ligD_pol; 1.
DR NCBIfam; TIGR02776; NHEJ_ligase_prk; 1.
DR PANTHER; PTHR42705; BIFUNCTIONAL NON-HOMOLOGOUS END JOINING PROTEIN LIGD; 1.
DR PANTHER; PTHR42705:SF2; MULTIFUNCTIONAL NON-HOMOLOGOUS END JOINING DNA REPAIR PROTEIN LIGD; 1.
DR Pfam; PF01068; DNA_ligase_A_M; 1.
DR Pfam; PF21686; LigD_Prim-Pol; 1.
DR SUPFAM; SSF56091; DNA ligase/mRNA capping enzyme, catalytic domain; 1.
DR PROSITE; PS00333; DNA_LIGASE_A2; 1.
DR PROSITE; PS50160; DNA_LIGASE_A3; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW DNA damage {ECO:0000256|ARBA:ARBA00022763};
KW DNA recombination {ECO:0000256|ARBA:ARBA00023172};
KW DNA repair {ECO:0000256|ARBA:ARBA00023204};
KW Ligase {ECO:0000256|ARBA:ARBA00022598, ECO:0000313|EMBL:OIK07643.1};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000180199}.
FT DOMAIN 106..233
FT /note="ATP-dependent DNA ligase family profile"
FT /evidence="ECO:0000259|PROSITE:PS50160"
SQ SEQUENCE 616 AA; 70356 MW; 085C79F84062CF78 CRC64;
MKPMLPTYKS DPPLGESWSY EVKYDGFRGI LTIGESHTEL LSRNNKQLLP NFPEIQRYAD
SIRPMLDGYL PVKLDGELTW LVNPCKSDFM HLQWRGRLGN WEAIENASYD SPAIFLAFDL
IEYKGQNLLN TAYSERKKLL KEFIRIPGMP ESPDPLDNAC IQYIPAFMDF QELMDMVVLY
DGEGIVAKHG ASLWEAGRRT QEWIKIKNWR TVSCFITGLN TVNGYFSLGV YRGNDIIPVG
QVKNGLPSHE RDILEQVIKS NAAGSDGASL FIHPSICVSV HFLHSYDESE LREPKFHKIL
VDAQPSQCTW EAFIEGQFTF PENIKMTSPD KPIWNTDNGG IITKIEYLQY LRDISSWMLP
RLYNKALTTI RYPHGVMSEE RFYQKNAPEY TPSFVDTFKE GDISYILCND IQTLLWLGNQ
LAIEFHAPFL SAGKNMPDEI VLDLDPPSSA SFPLAVKAAA AIKRFLDSIS ISGVLKTSGN
KGLQIHIPIP ADTYSYSDTR LFTDFLADYL LNAFPDDFTI ERMKKNRHGK LYLDFVQHGE
GKTIIVPYSA RGNSFAGAAT PLYWEELENE IAIEDFTIRN AAKRVRNHGC PFRHYEEYRA
NQPFQEVISF LNKHKK
//
