ID A0A1S2RD35_9BACI Unreviewed; 443 AA.
AC A0A1S2RD35;
DT 12-APR-2017, integrated into UniProtKB/TrEMBL.
DT 12-APR-2017, sequence version 1.
DT 24-JAN-2024, entry version 24.
DE SubName: Full=RNA polymerase sigma-54 factor {ECO:0000313|EMBL:OIK16400.1};
GN ORFNames=BIV60_05140 {ECO:0000313|EMBL:OIK16400.1};
OS Bacillus sp. MUM 116.
OC Bacteria; Bacillota; Bacilli; Bacillales; Bacillaceae; Bacillus.
OX NCBI_TaxID=1678002 {ECO:0000313|EMBL:OIK16400.1, ECO:0000313|Proteomes:UP000180019};
RN [1] {ECO:0000313|EMBL:OIK16400.1, ECO:0000313|Proteomes:UP000180019}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=MUM 116 {ECO:0000313|EMBL:OIK16400.1,
RC ECO:0000313|Proteomes:UP000180019};
RA Lee L.-H., Ser H.-L.;
RT "Genome sequence of Bacillus sp. MUM 116.";
RL Submitted (OCT-2016) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the sigma-54 factor family.
CC {ECO:0000256|ARBA:ARBA00008798}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:OIK16400.1}.
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DR EMBL; MLYR01000018; OIK16400.1; -; Genomic_DNA.
DR RefSeq; WP_071354648.1; NZ_MLYR01000018.1.
DR AlphaFoldDB; A0A1S2RD35; -.
DR STRING; 1678002.BIV60_05140; -.
DR OrthoDB; 9814402at2; -.
DR Proteomes; UP000180019; Unassembled WGS sequence.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0001216; F:DNA-binding transcription activator activity; IEA:InterPro.
DR GO; GO:0016779; F:nucleotidyltransferase activity; IEA:UniProtKB-KW.
DR GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 1.10.10.1330; RNA polymerase sigma-54 factor, core-binding domain; 1.
DR InterPro; IPR000394; RNA_pol_sigma_54.
DR InterPro; IPR007046; RNA_pol_sigma_54_core-bd.
DR InterPro; IPR007634; RNA_pol_sigma_54_DNA-bd.
DR InterPro; IPR038709; RpoN_core-bd_sf.
DR NCBIfam; TIGR02395; rpoN_sigma; 1.
DR PANTHER; PTHR32248; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR PANTHER; PTHR32248:SF4; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR Pfam; PF00309; Sigma54_AID; 1.
DR Pfam; PF04963; Sigma54_CBD; 1.
DR Pfam; PF04552; Sigma54_DBD; 1.
DR PIRSF; PIRSF000774; RpoN; 1.
DR PRINTS; PR00045; SIGMA54FCT.
DR PROSITE; PS00717; SIGMA54_1; 1.
DR PROSITE; PS00718; SIGMA54_2; 1.
DR PROSITE; PS50044; SIGMA54_3; 1.
PE 3: Inferred from homology;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478};
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW Reference proteome {ECO:0000313|Proteomes:UP000180019};
KW Sigma factor {ECO:0000256|ARBA:ARBA00023082};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT DOMAIN 85..266
FT /note="RNA polymerase sigma factor 54 core-binding"
FT /evidence="ECO:0000259|Pfam:PF04963"
FT DOMAIN 282..441
FT /note="RNA polymerase sigma factor 54 DNA-binding"
FT /evidence="ECO:0000259|Pfam:PF04552"
FT COILED 281..352
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 443 AA; 51038 MW; 608A5E4003BAAC1C CRC64;
MNLKAGLWQQ QTLKLTMTQE LTQAIALLQY SAMELNAFLE NKALENPLMQ IENGNVQPMN
PLIDRNRKKS QKAEKDWIEQ IAGKTVNSLE NQLISQLNLR KLTPEQLKTI RHLIHNLDEN
GYLSGDLADM AKMLKVSEEF VEECLIIIQT LEPVGIGARN LQECLLIQIE WEYPDHELAH
KIISDYFVPF ADKKWKQIAK ELQVSLKDIQ EVFDLIQLLN PKPGALLGHE DTTYVIPDVI
IEKYGDEYTI RMCDDSMPRL SFNDGYYKKF SGVQGQDPSV VKFLQDKMQD YQWIMKSIEQ
RKETLTKVVA KILEKQVPFF QKGPHYLLPM IMKDIANELE IHESTVSRAV REKYVQTPIG
TFPLKSFFTS TIQTTSDENT SSTLVKKAIS SLIEREDKQK PLSDQDIVEQ LKNAEGMVIS
RRTVAKYRDQ LGIPSSSKRK RFN
//
