ID A0A1S3ZDF2_TOBAC Unreviewed; 558 AA.
AC A0A1S3ZDF2;
DT 12-APR-2017, integrated into UniProtKB/TrEMBL.
DT 12-APR-2017, sequence version 1.
DT 27-MAR-2024, entry version 28.
DE SubName: Full=5'-3' exoribonuclease 3-like {ECO:0000313|RefSeq:XP_016462480.1};
GN Name=LOC107785646 {ECO:0000313|RefSeq:XP_016462480.1};
OS Nicotiana tabacum (Common tobacco).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae;
OC Nicotiana.
OX NCBI_TaxID=4097 {ECO:0000313|Proteomes:UP000084051, ECO:0000313|RefSeq:XP_016462480.1};
RN [1] {ECO:0000313|Proteomes:UP000084051}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. TN90 {ECO:0000313|Proteomes:UP000084051};
RX PubMed=24807620; DOI=10.1038/ncomms4833;
RA Sierro N., Battey J.N., Ouadi S., Bakaher N., Bovet L., Willig A.,
RA Goepfert S., Peitsch M.C., Ivanov N.V.;
RT "The tobacco genome sequence and its comparison with those of tomato and
RT potato.";
RL Nat. Commun. 5:3833-3833(2014).
RN [2] {ECO:0000313|RefSeq:XP_016462480.1}
RP IDENTIFICATION.
RG RefSeq;
RL Submitted (NOV-2023) to UniProtKB.
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DR RefSeq; XP_016462480.1; XM_016606994.1.
DR AlphaFoldDB; A0A1S3ZDF2; -.
DR SMR; A0A1S3ZDF2; -.
DR STRING; 4097.A0A1S3ZDF2; -.
DR PaxDb; 4097-A0A1S3ZDF2; -.
DR GeneID; 107785646; -.
DR KEGG; nta:107785646; -.
DR OMA; HAWQAVC; -.
DR OrthoDB; 167745at2759; -.
DR Proteomes; UP000084051; Unplaced.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0004534; F:5'-3' RNA exonuclease activity; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0000956; P:nuclear-transcribed mRNA catabolic process; IBA:GO_Central.
DR CDD; cd18673; PIN_XRN1-2-like; 1.
DR Gene3D; 1.25.40.1050; -; 1.
DR Gene3D; 3.40.50.12390; -; 2.
DR InterPro; IPR027073; 5_3_exoribonuclease.
DR InterPro; IPR041412; Xrn1_helical.
DR InterPro; IPR004859; Xrn1_N.
DR PANTHER; PTHR12341:SF79; 5'-3' EXORIBONUCLEASE 4-LIKE ISOFORM X1; 1.
DR PANTHER; PTHR12341; 5'->3' EXORIBONUCLEASE; 1.
DR Pfam; PF17846; XRN_M; 2.
DR Pfam; PF03159; XRN_N; 1.
PE 4: Predicted;
KW Exonuclease {ECO:0000256|ARBA:ARBA00022839};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Nuclease {ECO:0000256|ARBA:ARBA00022722};
KW Reference proteome {ECO:0000313|Proteomes:UP000084051}.
FT DOMAIN 1..151
FT /note="Xrn1 N-terminal"
FT /evidence="ECO:0000259|Pfam:PF03159"
FT DOMAIN 221..330
FT /note="Xrn1 helical"
FT /evidence="ECO:0000259|Pfam:PF17846"
FT DOMAIN 322..543
FT /note="Xrn1 helical"
FT /evidence="ECO:0000259|Pfam:PF17846"
FT REGION 1..48
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 156..184
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 18..48
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 558 AA; 64483 MW; 872F7F95431E8FFD CRC64;
MAIDGVAPRA KMNQQRARRF RAAKDAGDEA SDTGRIRRND ETEREDLSTK KLDSNVITPG
TKFMELLSSA LQYYIRLKVN VDSGWQGIKV ILSDASVPGE GEHKIMSYIR LQRNLPGFDP
NTRHCLYGLD ADLIMLALAS HEVHFSILRE DVRKDKSKYR GQQNRQDMYR QQAGRHSKKG
EGGGKDLENL ISEQKFQFLK VWVLRDYLGY ELQIPDPTVK LDLERLIDDF VFMCLFVGND
FLPHVPSLEI SEGAIDLLID VYKKEFVNMG GYLTNSCQVN LERAGHFIQA IGSYENAVFR
KRIQVQKHWG IHMQRPTLNL AVQKKQDKSN HVQAKTLSVV DKVKLGEEGW KERYYLEKFD
VQTEEDCVKI QRDVVLKYVE GICWVMHYYY QGVCSWQWFY PYHYAPFASD FHDLDRFKIH
STIGKPFKPF DQLMGVLPAA SAQALPVSYR KLMTDPLSPI LDFYPSDFEL DMNGKRHAWQ
AVCKLPFIEE SRLLSEIANV EDTLTVDEKH RNSLGLDMLF VYLSHPLATK ILAFCARNKD
NPKLPKAKVK RKINPEFR
//
