ID A0A1S4AVQ6_TOBAC Unreviewed; 550 AA.
AC A0A1S4AVQ6;
DT 12-APR-2017, integrated into UniProtKB/TrEMBL.
DT 12-APR-2017, sequence version 1.
DT 27-MAR-2024, entry version 24.
DE SubName: Full=DNA ligase 1-like isoform X2 {ECO:0000313|RefSeq:XP_016480660.1};
GN Name=LOC107801785 {ECO:0000313|RefSeq:XP_016480660.1};
OS Nicotiana tabacum (Common tobacco).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae;
OC Nicotiana.
OX NCBI_TaxID=4097 {ECO:0000313|Proteomes:UP000084051, ECO:0000313|RefSeq:XP_016480660.1};
RN [1] {ECO:0000313|Proteomes:UP000084051}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. TN90 {ECO:0000313|Proteomes:UP000084051};
RX PubMed=24807620; DOI=10.1038/ncomms4833;
RA Sierro N., Battey J.N., Ouadi S., Bakaher N., Bovet L., Willig A.,
RA Goepfert S., Peitsch M.C., Ivanov N.V.;
RT "The tobacco genome sequence and its comparison with those of tomato and
RT potato.";
RL Nat. Commun. 5:3833-3833(2014).
RN [2] {ECO:0000313|RefSeq:XP_016480660.1}
RP IDENTIFICATION.
RG RefSeq;
RL Submitted (NOV-2023) to UniProtKB.
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DR RefSeq; XP_016480660.1; XM_016625174.1.
DR AlphaFoldDB; A0A1S4AVQ6; -.
DR GeneID; 107801785; -.
DR OMA; SHRNECL; -.
DR OrthoDB; 464084at2759; -.
DR Proteomes; UP000084051; Unplaced.
DR GO; GO:0003682; F:chromatin binding; IEA:InterPro.
DR GO; GO:0016874; F:ligase activity; IEA:UniProtKB-KW.
DR GO; GO:0006351; P:DNA-templated transcription; IEA:InterPro.
DR CDD; cd04713; BAH_plant_3; 1.
DR Gene3D; 2.30.30.490; -; 1.
DR Gene3D; 1.10.472.30; Transcription elongation factor S-II, central domain; 1.
DR InterPro; IPR001025; BAH_dom.
DR InterPro; IPR043151; BAH_sf.
DR InterPro; IPR003618; TFIIS_cen_dom.
DR InterPro; IPR036575; TFIIS_cen_dom_sf.
DR PANTHER; PTHR46871; BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR46871:SF1; BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN; 1.
DR Pfam; PF01426; BAH; 1.
DR Pfam; PF07500; TFIIS_M; 1.
DR SMART; SM00439; BAH; 1.
DR SMART; SM00510; TFS2M; 1.
DR SUPFAM; SSF46942; Elongation factor TFIIS domain 2; 1.
DR PROSITE; PS51038; BAH; 1.
DR PROSITE; PS51321; TFIIS_CENTRAL; 1.
PE 4: Predicted;
KW Ligase {ECO:0000313|RefSeq:XP_016480660.1};
KW Reference proteome {ECO:0000313|Proteomes:UP000084051}.
FT DOMAIN 157..276
FT /note="BAH"
FT /evidence="ECO:0000259|PROSITE:PS51038"
FT DOMAIN 380..545
FT /note="TFIIS central"
FT /evidence="ECO:0000259|PROSITE:PS51321"
FT REGION 1..131
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 329..356
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 526..550
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 37..52
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 66..106
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 107..127
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 329..347
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 550 AA; 63365 MW; A2579AA49BD4862F CRC64;
MGNRRLAVVA ISDDEDDDDK LPLSRVTRAS NNGEVKANSQ RKRKKVKLDE EEEEKPQEEE
EEANNDDESR DKRKKKRKMW ENEEEEEEER GRGKRNKKKK FDEEPELESE PEPVEEEEEE
VEEEQLEDAK PIGDVIRVTG KGKGRRNHYE SFEYDGNRYE LEDPVLLVPE AKNQKPYVAI
IKDITQTKDV NMMVTGQWFY RPEEAQRRNG GNWQSRDTRE LFYSFHRDEV PAESVMHKCV
VHFIPLNKQI PGRKEHPGFI VQKVYDTEQM KLFKLTDKDY EDTKQQEIDL LVHKTIARVG
HLPDIETEDN SAAPVSQEDQ LKSKRLLRKK SMTPLDVTRE DEAPTRFGQS KAETPGSCPN
NASEYFIILS NFNVLTGETQ RDKWLDKLLQ SIQFLCNPVD NVQNDGKEKG GSDVTDLTCN
SGSAKHVNES PDNGANDDKF RWPDSAVPAV VALEKAAHET LSCDFQKYNQ KMRQLTFNLK
NNSSLSKTFQ NSSLLARRLL NGELDPSQIL NMSPNELKEG LTAEEIASRE PEEPEPIQMT
DASYRKLYKG
//
