ID A0A1T4VBB3_9GAMM Unreviewed; 954 AA.
AC A0A1T4VBB3;
DT 10-MAY-2017, integrated into UniProtKB/TrEMBL.
DT 10-MAY-2017, sequence version 1.
DT 27-MAR-2024, entry version 29.
DE RecName: Full=Glycine dehydrogenase (decarboxylating) {ECO:0000256|HAMAP-Rule:MF_00711};
DE EC=1.4.4.2 {ECO:0000256|HAMAP-Rule:MF_00711};
DE AltName: Full=Glycine cleavage system P-protein {ECO:0000256|HAMAP-Rule:MF_00711};
DE AltName: Full=Glycine decarboxylase {ECO:0000256|HAMAP-Rule:MF_00711};
DE AltName: Full=Glycine dehydrogenase (aminomethyl-transferring) {ECO:0000256|HAMAP-Rule:MF_00711};
GN Name=gcvP {ECO:0000256|HAMAP-Rule:MF_00711};
GN ORFNames=SAMN02745132_03589 {ECO:0000313|EMBL:SKA62234.1};
OS Enterovibrio nigricans DSM 22720.
OC Bacteria; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae;
OC Enterovibrio.
OX NCBI_TaxID=1121868 {ECO:0000313|EMBL:SKA62234.1, ECO:0000313|Proteomes:UP000190162};
RN [1] {ECO:0000313|Proteomes:UP000190162}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=DSM 22720 {ECO:0000313|Proteomes:UP000190162};
RA Varghese N., Submissions S.;
RL Submitted (FEB-2017) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: The glycine cleavage system catalyzes the degradation of
CC glycine. The P protein binds the alpha-amino group of glycine through
CC its pyridoxal phosphate cofactor; CO(2) is released and the remaining
CC methylamine moiety is then transferred to the lipoamide cofactor of the
CC H protein. {ECO:0000256|ARBA:ARBA00003788, ECO:0000256|HAMAP-
CC Rule:MF_00711}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=glycine + H(+) + N(6)-[(R)-lipoyl]-L-lysyl-[glycine-cleavage
CC complex H protein] = CO2 + N(6)-[(R)-S(8)-aminomethyldihydrolipoyl]-
CC L-lysyl-[glycine-cleavage complex H protein]; Xref=Rhea:RHEA:24304,
CC Rhea:RHEA-COMP:10494, Rhea:RHEA-COMP:10495, ChEBI:CHEBI:15378,
CC ChEBI:CHEBI:16526, ChEBI:CHEBI:57305, ChEBI:CHEBI:83099,
CC ChEBI:CHEBI:83143; EC=1.4.4.2;
CC Evidence={ECO:0000256|ARBA:ARBA00043839, ECO:0000256|HAMAP-
CC Rule:MF_00711};
CC -!- COFACTOR:
CC Name=pyridoxal 5'-phosphate; Xref=ChEBI:CHEBI:597326;
CC Evidence={ECO:0000256|ARBA:ARBA00001933,
CC ECO:0000256|HAMAP-Rule:MF_00711, ECO:0000256|PIRSR:PIRSR603437-50};
CC -!- SUBUNIT: The glycine cleavage system is composed of four proteins: P,
CC T, L and H. {ECO:0000256|ARBA:ARBA00011690, ECO:0000256|HAMAP-
CC Rule:MF_00711}.
CC -!- SIMILARITY: Belongs to the GcvP family. {ECO:0000256|ARBA:ARBA00010756,
CC ECO:0000256|HAMAP-Rule:MF_00711}.
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DR EMBL; FUXU01000060; SKA62234.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A1T4VBB3; -.
DR OrthoDB; 9801272at2; -.
DR Proteomes; UP000190162; Unassembled WGS sequence.
DR GO; GO:0004375; F:glycine dehydrogenase (decarboxylating) activity; IEA:UniProtKB-EC.
DR GO; GO:0019464; P:glycine decarboxylation via glycine cleavage system; IEA:UniProtKB-UniRule.
DR CDD; cd00613; GDC-P; 2.
DR Gene3D; 3.90.1150.10; Aspartate Aminotransferase, domain 1; 2.
DR Gene3D; 3.40.640.10; Type I PLP-dependent aspartate aminotransferase-like (Major domain); 2.
DR HAMAP; MF_00711; GcvP; 1.
DR InterPro; IPR003437; GcvP.
DR InterPro; IPR049316; GDC-P_C.
DR InterPro; IPR049315; GDC-P_N.
DR InterPro; IPR020581; GDC_P.
DR InterPro; IPR015424; PyrdxlP-dep_Trfase.
DR InterPro; IPR015421; PyrdxlP-dep_Trfase_major.
DR InterPro; IPR015422; PyrdxlP-dep_Trfase_small.
DR NCBIfam; TIGR00461; gcvP; 1.
DR PANTHER; PTHR11773:SF13; GLYCINE DEHYDROGENASE (DECARBOXYLATING); 1.
DR PANTHER; PTHR11773; GLYCINE DEHYDROGENASE, DECARBOXYLATING; 1.
DR Pfam; PF21478; GcvP2_C; 1.
DR Pfam; PF02347; GDC-P; 2.
DR SUPFAM; SSF53383; PLP-dependent transferases; 2.
PE 3: Inferred from homology;
KW Oxidoreductase {ECO:0000256|ARBA:ARBA00023002, ECO:0000256|HAMAP-
KW Rule:MF_00711};
KW Pyridoxal phosphate {ECO:0000256|HAMAP-Rule:MF_00711,
KW ECO:0000256|PIRSR:PIRSR603437-50}.
FT DOMAIN 19..439
FT /note="Glycine cleavage system P-protein N-terminal"
FT /evidence="ECO:0000259|Pfam:PF02347"
FT DOMAIN 460..738
FT /note="Glycine cleavage system P-protein N-terminal"
FT /evidence="ECO:0000259|Pfam:PF02347"
FT DOMAIN 773..894
FT /note="Glycine dehydrogenase C-terminal"
FT /evidence="ECO:0000259|Pfam:PF21478"
FT MOD_RES 706
FT /note="N6-(pyridoxal phosphate)lysine"
FT /evidence="ECO:0000256|HAMAP-Rule:MF_00711,
FT ECO:0000256|PIRSR:PIRSR603437-50"
SQ SEQUENCE 954 AA; 103889 MW; 4991ADE7C5CA4496 CRC64;
MTESRLLDQL LPDNEFVTRH NGPRESDQQA MLDAINATSL EHLIEETVPA AIRLPEPMKL
EGPKSEVDML ATLKAIASKN VIKRSLIGQG YYGTHTPHPI LRNVLENPGW YTAYTPYQPE
ISQGRLESLL NFQQMVMDLT GMELANASLL DEATAAAEAM TLCKRGGKSK SNAFFVADDV
HPQTLDVINT RAKFMGFDVI TGPADTLTSH DVFGALLQYP GTTGQVCDLS DLIAAAHANK
ILVTVASDLL ALTLLKSPGE MGADVVIGSS QRFGVPMGYG GPHAAFMATR DKLKRTMPGR
VIGVSVDSKG NQALRMAMQT REQHIRREKA TSNICTAQAL LANMAAFFAV YHGPEGLKKI
GRRVHHLTAL AAAAFNHAGI SLAYHDFFDT ITLNTGDKTD TLFKKADEAG FNLRKLDGQL
GISFDETSTL EEVNALVSAL TDETDVSQFA SSVEADEFAA IPESCRRTSD YLTHPVFNTH
QSETQLMRYM KKLENKDFSL THGMIPLGSC TMKLNAAAEM IPVTWPEFGA LHPFVPAEQA
QGYSDLADSF SKMLCEITGY DAMSLQPNSG AQGEYAGLIA IQRYHESRGD AHRNVCLIPS
SAHGTNPASA AMVSMKVVVV GCDENGNIDV SDLKAKIDKH RHDLSCIMIT YPSTHGVYEE
AVQEVCELVH EAGGQVYLDG ANMNAQVGLT SPGFIGSDVS HLNLHKTFCI PHGGGGPGMG
PIGVKSHLAP FLPGHVVDGS NYAVSAAQIG SASILPISWA YIAMMGEQGL TEATKVAILS
ANYVMERLRP YYPVLYRGTH GRIAHECIID IRPLKEASGI SEEDIAKRLM DFGFHAPTMS
FPVAGTLMVE PTESEDLAEL DRFCDAMIAI REEIAKVQDG EWPLENNPLV KAPHTQADLM
SVEWDRPYSR ELACFPSVQA KEAKYWPTVN RVDNVYGDRN LICSCPSIES YMDE
//
